Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS05000 and HMPREF1058_RS04995 are separated by 91 nucleotides HMPREF1058_RS04995 and HMPREF1058_RS04990 are separated by 88 nucleotides HMPREF1058_RS04990 and HMPREF1058_RS04985 are separated by 12 nucleotides
HMPREF1058_RS05000: HMPREF1058_RS05000 - DUF4010 domain-containing protein, at 269,761 to 271,050
_RS05000
HMPREF1058_RS04995: HMPREF1058_RS04995 - putative sulfate exporter family transporter, at 271,142 to 272,128
_RS04995
HMPREF1058_RS04990: HMPREF1058_RS04990 - LysR family transcriptional regulator, at 272,217 to 273,113
_RS04990
HMPREF1058_RS04985: HMPREF1058_RS04985 - hypothetical protein, at 273,126 to 273,707
_RS04985
Position (kb) 271
272
273 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 270.185 kb on + strand, within HMPREF1058_RS05000 at 270.186 kb on - strand, within HMPREF1058_RS05000 at 270.344 kb on - strand, within HMPREF1058_RS05000 at 270.418 kb on + strand, within HMPREF1058_RS05000 at 270.419 kb on - strand, within HMPREF1058_RS05000 at 270.490 kb on + strand, within HMPREF1058_RS05000 at 270.491 kb on - strand, within HMPREF1058_RS05000 at 270.495 kb on - strand, within HMPREF1058_RS05000 at 270.552 kb on + strand, within HMPREF1058_RS05000 at 270.555 kb on - strand, within HMPREF1058_RS05000 at 270.630 kb on - strand, within HMPREF1058_RS05000 at 270.648 kb on + strand, within HMPREF1058_RS05000 at 270.651 kb on + strand, within HMPREF1058_RS05000 at 270.652 kb on - strand, within HMPREF1058_RS05000 at 270.654 kb on - strand, within HMPREF1058_RS05000 at 270.737 kb on + strand, within HMPREF1058_RS05000 at 270.747 kb on - strand, within HMPREF1058_RS05000 at 270.768 kb on + strand, within HMPREF1058_RS05000 at 270.769 kb on - strand, within HMPREF1058_RS05000 at 270.769 kb on - strand, within HMPREF1058_RS05000 at 270.845 kb on + strand, within HMPREF1058_RS05000 at 270.858 kb on - strand, within HMPREF1058_RS05000 at 270.887 kb on + strand, within HMPREF1058_RS05000 at 270.897 kb on + strand, within HMPREF1058_RS05000 at 270.933 kb on + strand at 270.933 kb on + strand at 270.940 kb on + strand at 270.983 kb on - strand at 271.026 kb on - strand at 271.031 kb on + strand at 271.031 kb on + strand at 271.040 kb on - strand at 271.115 kb on - strand at 271.125 kb on - strand at 271.156 kb on + strand at 271.156 kb on + strand at 271.157 kb on - strand at 271.157 kb on - strand at 271.157 kb on - strand at 271.235 kb on + strand at 271.236 kb on - strand at 271.273 kb on + strand, within HMPREF1058_RS04995 at 271.289 kb on - strand, within HMPREF1058_RS04995 at 271.342 kb on - strand, within HMPREF1058_RS04995 at 271.346 kb on - strand, within HMPREF1058_RS04995 at 271.371 kb on + strand, within HMPREF1058_RS04995 at 271.546 kb on + strand, within HMPREF1058_RS04995 at 271.547 kb on - strand, within HMPREF1058_RS04995 at 271.594 kb on + strand, within HMPREF1058_RS04995 at 271.595 kb on - strand, within HMPREF1058_RS04995 at 271.649 kb on - strand, within HMPREF1058_RS04995 at 271.745 kb on - strand, within HMPREF1058_RS04995 at 271.766 kb on + strand, within HMPREF1058_RS04995 at 271.767 kb on - strand, within HMPREF1058_RS04995 at 271.767 kb on - strand, within HMPREF1058_RS04995 at 271.767 kb on - strand, within HMPREF1058_RS04995 at 271.795 kb on + strand, within HMPREF1058_RS04995 at 271.795 kb on + strand, within HMPREF1058_RS04995 at 271.795 kb on + strand, within HMPREF1058_RS04995 at 271.796 kb on - strand, within HMPREF1058_RS04995 at 271.799 kb on + strand, within HMPREF1058_RS04995 at 271.799 kb on + strand, within HMPREF1058_RS04995 at 271.800 kb on - strand, within HMPREF1058_RS04995 at 271.800 kb on - strand, within HMPREF1058_RS04995 at 271.918 kb on - strand, within HMPREF1058_RS04995 at 271.918 kb on - strand, within HMPREF1058_RS04995 at 271.922 kb on - strand, within HMPREF1058_RS04995 at 271.943 kb on - strand, within HMPREF1058_RS04995 at 272.038 kb on + strand at 272.040 kb on + strand at 272.041 kb on - strand at 272.089 kb on + strand at 272.179 kb on + strand at 272.180 kb on - strand at 272.213 kb on + strand at 272.476 kb on - strand, within HMPREF1058_RS04990 at 272.476 kb on - strand, within HMPREF1058_RS04990 at 272.476 kb on - strand, within HMPREF1058_RS04990 at 272.506 kb on - strand, within HMPREF1058_RS04990 at 272.594 kb on + strand, within HMPREF1058_RS04990 at 272.595 kb on - strand, within HMPREF1058_RS04990 at 272.597 kb on + strand, within HMPREF1058_RS04990 at 272.642 kb on + strand, within HMPREF1058_RS04990 at 272.644 kb on + strand, within HMPREF1058_RS04990 at 272.645 kb on - strand, within HMPREF1058_RS04990 at 272.645 kb on - strand, within HMPREF1058_RS04990 at 272.654 kb on + strand, within HMPREF1058_RS04990 at 272.655 kb on - strand, within HMPREF1058_RS04990 at 272.692 kb on - strand, within HMPREF1058_RS04990 at 272.816 kb on + strand, within HMPREF1058_RS04990 at 272.816 kb on + strand, within HMPREF1058_RS04990 at 273.059 kb on + strand at 273.128 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day3 remove 270,185 + HMPREF1058_RS05000 0.33 -0.4 270,186 - HMPREF1058_RS05000 0.33 -1.7 270,344 - HMPREF1058_RS05000 0.45 -1.5 270,418 + HMPREF1058_RS05000 0.51 -0.3 270,419 - HMPREF1058_RS05000 0.51 -0.9 270,490 + HMPREF1058_RS05000 0.57 -0.7 270,491 - HMPREF1058_RS05000 0.57 -1.7 270,495 - HMPREF1058_RS05000 0.57 +2.1 270,552 + HMPREF1058_RS05000 0.61 +0.7 270,555 - HMPREF1058_RS05000 0.62 -2.5 270,630 - HMPREF1058_RS05000 0.67 -0.4 270,648 + HMPREF1058_RS05000 0.69 -0.9 270,651 + HMPREF1058_RS05000 0.69 -1.5 270,652 - HMPREF1058_RS05000 0.69 -3.1 270,654 - HMPREF1058_RS05000 0.69 +0.7 270,737 + HMPREF1058_RS05000 0.76 +0.9 270,747 - HMPREF1058_RS05000 0.76 +2.1 270,768 + HMPREF1058_RS05000 0.78 +0.1 270,769 - HMPREF1058_RS05000 0.78 +3.6 270,769 - HMPREF1058_RS05000 0.78 +2.3 270,845 + HMPREF1058_RS05000 0.84 -0.2 270,858 - HMPREF1058_RS05000 0.85 +4.6 270,887 + HMPREF1058_RS05000 0.87 -2.2 270,897 + HMPREF1058_RS05000 0.88 +2.5 270,933 + -0.0 270,933 + -1.5 270,940 + +0.5 270,983 - -2.6 271,026 - +1.1 271,031 + +1.3 271,031 + -0.5 271,040 - -1.1 271,115 - -0.5 271,125 - +1.5 271,156 + -1.5 271,156 + +1.1 271,157 - -0.5 271,157 - -0.7 271,157 - -0.9 271,235 + -2.5 271,236 - -0.2 271,273 + HMPREF1058_RS04995 0.13 +1.8 271,289 - HMPREF1058_RS04995 0.15 -0.1 271,342 - HMPREF1058_RS04995 0.20 -0.6 271,346 - HMPREF1058_RS04995 0.21 +2.7 271,371 + HMPREF1058_RS04995 0.23 -3.7 271,546 + HMPREF1058_RS04995 0.41 -1.5 271,547 - HMPREF1058_RS04995 0.41 -0.7 271,594 + HMPREF1058_RS04995 0.46 -1.9 271,595 - HMPREF1058_RS04995 0.46 -2.5 271,649 - HMPREF1058_RS04995 0.51 -3.2 271,745 - HMPREF1058_RS04995 0.61 -3.2 271,766 + HMPREF1058_RS04995 0.63 -0.7 271,767 - HMPREF1058_RS04995 0.63 -2.0 271,767 - HMPREF1058_RS04995 0.63 -1.3 271,767 - HMPREF1058_RS04995 0.63 -1.5 271,795 + HMPREF1058_RS04995 0.66 +0.1 271,795 + HMPREF1058_RS04995 0.66 -0.1 271,795 + HMPREF1058_RS04995 0.66 +1.7 271,796 - HMPREF1058_RS04995 0.66 -0.9 271,799 + HMPREF1058_RS04995 0.67 +0.1 271,799 + HMPREF1058_RS04995 0.67 +1.3 271,800 - HMPREF1058_RS04995 0.67 -0.1 271,800 - HMPREF1058_RS04995 0.67 +0.1 271,918 - HMPREF1058_RS04995 0.79 +0.1 271,918 - HMPREF1058_RS04995 0.79 -2.2 271,922 - HMPREF1058_RS04995 0.79 +4.0 271,943 - HMPREF1058_RS04995 0.81 -2.5 272,038 + -0.9 272,040 + +0.7 272,041 - -0.9 272,089 + +0.2 272,179 + -2.7 272,180 - -0.7 272,213 + +1.4 272,476 - HMPREF1058_RS04990 0.29 -1.9 272,476 - HMPREF1058_RS04990 0.29 -1.1 272,476 - HMPREF1058_RS04990 0.29 -0.4 272,506 - HMPREF1058_RS04990 0.32 -3.7 272,594 + HMPREF1058_RS04990 0.42 -2.9 272,595 - HMPREF1058_RS04990 0.42 +2.9 272,597 + HMPREF1058_RS04990 0.42 -0.6 272,642 + HMPREF1058_RS04990 0.47 -1.9 272,644 + HMPREF1058_RS04990 0.48 -1.5 272,645 - HMPREF1058_RS04990 0.48 -0.3 272,645 - HMPREF1058_RS04990 0.48 -2.9 272,654 + HMPREF1058_RS04990 0.49 -0.5 272,655 - HMPREF1058_RS04990 0.49 -0.9 272,692 - HMPREF1058_RS04990 0.53 +0.4 272,816 + HMPREF1058_RS04990 0.67 -0.9 272,816 + HMPREF1058_RS04990 0.67 +0.1 273,059 + +1.7 273,128 - +0.3
Or see this region's nucleotide sequence