Experiment: diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS11065 and HMPREF1058_RS11060 overlap by 1 nucleotides HMPREF1058_RS11060 and HMPREF1058_RS11055 are separated by 170 nucleotides
HMPREF1058_RS11065: HMPREF1058_RS11065 - dihydrolipoyl dehydrogenase, at 487,289 to 488,629
_RS11065
HMPREF1058_RS11060: HMPREF1058_RS11060 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase, at 488,629 to 490,029
_RS11060
HMPREF1058_RS11055: HMPREF1058_RS11055 - 5-dehydro-4-deoxy-D-glucuronate isomerase, at 490,200 to 491,042
_RS11055
Position (kb) 488
489
490
491 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 487.636 kb on + strand, within HMPREF1058_RS11065 at 487.711 kb on + strand, within HMPREF1058_RS11065 at 487.783 kb on - strand, within HMPREF1058_RS11065 at 487.938 kb on - strand, within HMPREF1058_RS11065 at 488.152 kb on - strand, within HMPREF1058_RS11065 at 488.191 kb on - strand, within HMPREF1058_RS11065 at 488.191 kb on - strand, within HMPREF1058_RS11065 at 488.228 kb on - strand, within HMPREF1058_RS11065 at 488.264 kb on - strand, within HMPREF1058_RS11065 at 488.264 kb on - strand, within HMPREF1058_RS11065 at 488.266 kb on - strand, within HMPREF1058_RS11065 at 488.268 kb on + strand, within HMPREF1058_RS11065 at 488.269 kb on - strand, within HMPREF1058_RS11065 at 488.344 kb on + strand, within HMPREF1058_RS11065 at 488.374 kb on + strand, within HMPREF1058_RS11065 at 488.497 kb on + strand at 488.497 kb on + strand at 488.498 kb on - strand at 488.539 kb on + strand at 488.540 kb on - strand at 488.566 kb on - strand at 488.586 kb on + strand at 488.587 kb on - strand at 488.587 kb on - strand at 488.625 kb on + strand at 488.628 kb on - strand at 488.654 kb on + strand at 488.663 kb on + strand at 488.663 kb on + strand at 488.811 kb on - strand, within HMPREF1058_RS11060 at 488.838 kb on - strand, within HMPREF1058_RS11060 at 488.881 kb on - strand, within HMPREF1058_RS11060 at 488.945 kb on - strand, within HMPREF1058_RS11060 at 489.213 kb on + strand, within HMPREF1058_RS11060 at 489.369 kb on - strand, within HMPREF1058_RS11060 at 489.371 kb on - strand, within HMPREF1058_RS11060 at 489.373 kb on - strand, within HMPREF1058_RS11060 at 489.479 kb on + strand, within HMPREF1058_RS11060 at 489.480 kb on - strand, within HMPREF1058_RS11060 at 489.480 kb on - strand, within HMPREF1058_RS11060 at 489.483 kb on + strand, within HMPREF1058_RS11060 at 489.491 kb on - strand, within HMPREF1058_RS11060 at 489.493 kb on - strand, within HMPREF1058_RS11060 at 489.547 kb on - strand, within HMPREF1058_RS11060 at 489.645 kb on + strand, within HMPREF1058_RS11060 at 489.680 kb on - strand, within HMPREF1058_RS11060 at 489.681 kb on + strand, within HMPREF1058_RS11060 at 489.681 kb on + strand, within HMPREF1058_RS11060 at 489.681 kb on + strand, within HMPREF1058_RS11060 at 489.682 kb on - strand, within HMPREF1058_RS11060 at 489.682 kb on - strand, within HMPREF1058_RS11060 at 489.714 kb on + strand, within HMPREF1058_RS11060 at 489.715 kb on - strand, within HMPREF1058_RS11060 at 489.715 kb on - strand, within HMPREF1058_RS11060 at 489.791 kb on - strand, within HMPREF1058_RS11060 at 489.914 kb on - strand at 489.917 kb on + strand at 489.918 kb on - strand at 490.019 kb on + strand at 490.020 kb on - strand at 490.058 kb on - strand at 490.061 kb on - strand at 490.061 kb on - strand at 490.080 kb on + strand at 490.102 kb on - strand at 490.191 kb on + strand at 490.192 kb on - strand at 490.271 kb on - strand at 490.326 kb on + strand, within HMPREF1058_RS11055 at 490.326 kb on + strand, within HMPREF1058_RS11055 at 490.327 kb on - strand, within HMPREF1058_RS11055 at 490.335 kb on + strand, within HMPREF1058_RS11055 at 490.335 kb on + strand, within HMPREF1058_RS11055 at 490.505 kb on + strand, within HMPREF1058_RS11055 at 490.506 kb on - strand, within HMPREF1058_RS11055 at 490.506 kb on - strand, within HMPREF1058_RS11055 at 490.590 kb on - strand, within HMPREF1058_RS11055 at 490.717 kb on + strand, within HMPREF1058_RS11055 at 490.891 kb on + strand, within HMPREF1058_RS11055 at 490.892 kb on - strand, within HMPREF1058_RS11055 at 490.935 kb on - strand, within HMPREF1058_RS11055 at 490.940 kb on + strand, within HMPREF1058_RS11055 at 490.963 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=PolysaccharideDeficient; sample=FecalPellet; inoculation=MixComm; mouse10; day2 remove 487,636 + HMPREF1058_RS11065 0.26 -0.3 487,711 + HMPREF1058_RS11065 0.31 -1.5 487,783 - HMPREF1058_RS11065 0.37 -0.9 487,938 - HMPREF1058_RS11065 0.48 -1.2 488,152 - HMPREF1058_RS11065 0.64 -0.9 488,191 - HMPREF1058_RS11065 0.67 -0.5 488,191 - HMPREF1058_RS11065 0.67 +2.0 488,228 - HMPREF1058_RS11065 0.70 -0.2 488,264 - HMPREF1058_RS11065 0.73 -1.3 488,264 - HMPREF1058_RS11065 0.73 -1.4 488,266 - HMPREF1058_RS11065 0.73 -1.3 488,268 + HMPREF1058_RS11065 0.73 -0.6 488,269 - HMPREF1058_RS11065 0.73 -1.2 488,344 + HMPREF1058_RS11065 0.79 -1.7 488,374 + HMPREF1058_RS11065 0.81 -1.3 488,497 + +0.7 488,497 + -2.3 488,498 - -0.8 488,539 + -2.3 488,540 - -3.3 488,566 - -2.0 488,586 + -0.9 488,587 - -3.1 488,587 - -2.3 488,625 + -0.2 488,628 - +0.2 488,654 + +0.4 488,663 + +0.2 488,663 + +0.3 488,811 - HMPREF1058_RS11060 0.13 +1.5 488,838 - HMPREF1058_RS11060 0.15 -0.6 488,881 - HMPREF1058_RS11060 0.18 +0.6 488,945 - HMPREF1058_RS11060 0.23 +4.4 489,213 + HMPREF1058_RS11060 0.42 -1.3 489,369 - HMPREF1058_RS11060 0.53 +1.4 489,371 - HMPREF1058_RS11060 0.53 +0.5 489,373 - HMPREF1058_RS11060 0.53 +1.4 489,479 + HMPREF1058_RS11060 0.61 -1.2 489,480 - HMPREF1058_RS11060 0.61 -0.1 489,480 - HMPREF1058_RS11060 0.61 +0.4 489,483 + HMPREF1058_RS11060 0.61 -0.3 489,491 - HMPREF1058_RS11060 0.62 -1.9 489,493 - HMPREF1058_RS11060 0.62 +1.0 489,547 - HMPREF1058_RS11060 0.66 -0.7 489,645 + HMPREF1058_RS11060 0.73 +0.7 489,680 - HMPREF1058_RS11060 0.75 +1.1 489,681 + HMPREF1058_RS11060 0.75 +4.6 489,681 + HMPREF1058_RS11060 0.75 +0.2 489,681 + HMPREF1058_RS11060 0.75 -1.1 489,682 - HMPREF1058_RS11060 0.75 +1.1 489,682 - HMPREF1058_RS11060 0.75 -0.3 489,714 + HMPREF1058_RS11060 0.77 +0.6 489,715 - HMPREF1058_RS11060 0.78 +0.8 489,715 - HMPREF1058_RS11060 0.78 -0.0 489,791 - HMPREF1058_RS11060 0.83 -1.3 489,914 - +0.7 489,917 + -2.9 489,918 - +0.3 490,019 + +0.8 490,020 - -1.0 490,058 - -1.9 490,061 - +1.5 490,061 - +0.3 490,080 + -0.4 490,102 - -0.6 490,191 + -0.7 490,192 - -0.5 490,271 - +1.3 490,326 + HMPREF1058_RS11055 0.15 -0.5 490,326 + HMPREF1058_RS11055 0.15 +0.2 490,327 - HMPREF1058_RS11055 0.15 -2.3 490,335 + HMPREF1058_RS11055 0.16 -0.2 490,335 + HMPREF1058_RS11055 0.16 +1.8 490,505 + HMPREF1058_RS11055 0.36 +1.1 490,506 - HMPREF1058_RS11055 0.36 -0.5 490,506 - HMPREF1058_RS11055 0.36 -3.3 490,590 - HMPREF1058_RS11055 0.46 +0.4 490,717 + HMPREF1058_RS11055 0.61 -2.0 490,891 + HMPREF1058_RS11055 0.82 -0.8 490,892 - HMPREF1058_RS11055 0.82 -0.6 490,935 - HMPREF1058_RS11055 0.87 -0.0 490,940 + HMPREF1058_RS11055 0.88 +0.8 490,963 - -2.0
Or see this region's nucleotide sequence