Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS12570

Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1058_RS12575 and HMPREF1058_RS12570 are separated by 88 nucleotidesHMPREF1058_RS12570 and HMPREF1058_RS12565 are separated by 51 nucleotidesHMPREF1058_RS12565 and HMPREF1058_RS12560 are separated by 200 nucleotides HMPREF1058_RS12575: HMPREF1058_RS12575 - mannose-1-phosphate guanylyltransferase, at 75,652 to 76,695 _RS12575 HMPREF1058_RS12570: HMPREF1058_RS12570 - HIT family protein, at 76,784 to 77,191 _RS12570 HMPREF1058_RS12565: HMPREF1058_RS12565 - transcription elongation factor GreA, at 77,243 to 77,707 _RS12565 HMPREF1058_RS12560: HMPREF1058_RS12560 - redoxin domain-containing protein, at 77,908 to 79,056 _RS12560 Position (kb) 76 77 78Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 75.843 kb on - strand, within HMPREF1058_RS12575at 75.847 kb on + strand, within HMPREF1058_RS12575at 75.848 kb on - strand, within HMPREF1058_RS12575at 75.934 kb on - strand, within HMPREF1058_RS12575at 75.949 kb on + strand, within HMPREF1058_RS12575at 75.954 kb on + strand, within HMPREF1058_RS12575at 76.088 kb on + strand, within HMPREF1058_RS12575at 76.089 kb on - strand, within HMPREF1058_RS12575at 76.089 kb on - strand, within HMPREF1058_RS12575at 76.089 kb on - strand, within HMPREF1058_RS12575at 76.089 kb on - strand, within HMPREF1058_RS12575at 76.093 kb on - strand, within HMPREF1058_RS12575at 76.126 kb on + strand, within HMPREF1058_RS12575at 76.127 kb on - strand, within HMPREF1058_RS12575at 76.170 kb on - strand, within HMPREF1058_RS12575at 76.250 kb on + strand, within HMPREF1058_RS12575at 76.251 kb on - strand, within HMPREF1058_RS12575at 76.263 kb on + strand, within HMPREF1058_RS12575at 76.264 kb on - strand, within HMPREF1058_RS12575at 76.270 kb on - strand, within HMPREF1058_RS12575at 76.356 kb on + strand, within HMPREF1058_RS12575at 76.433 kb on + strand, within HMPREF1058_RS12575at 76.434 kb on - strand, within HMPREF1058_RS12575at 76.434 kb on - strand, within HMPREF1058_RS12575at 76.454 kb on - strand, within HMPREF1058_RS12575at 76.454 kb on - strand, within HMPREF1058_RS12575at 76.460 kb on + strand, within HMPREF1058_RS12575at 76.460 kb on + strand, within HMPREF1058_RS12575at 76.491 kb on - strand, within HMPREF1058_RS12575at 76.511 kb on + strand, within HMPREF1058_RS12575at 76.512 kb on - strand, within HMPREF1058_RS12575at 76.514 kb on - strand, within HMPREF1058_RS12575at 76.516 kb on - strand, within HMPREF1058_RS12575at 76.522 kb on + strand, within HMPREF1058_RS12575at 76.523 kb on - strand, within HMPREF1058_RS12575at 76.527 kb on + strand, within HMPREF1058_RS12575at 76.528 kb on - strand, within HMPREF1058_RS12575at 76.532 kb on + strand, within HMPREF1058_RS12575at 76.533 kb on - strand, within HMPREF1058_RS12575at 76.535 kb on + strand, within HMPREF1058_RS12575at 76.536 kb on - strand, within HMPREF1058_RS12575at 76.539 kb on - strand, within HMPREF1058_RS12575at 76.566 kb on - strand, within HMPREF1058_RS12575at 76.574 kb on + strand, within HMPREF1058_RS12575at 76.575 kb on - strand, within HMPREF1058_RS12575at 76.586 kb on + strand, within HMPREF1058_RS12575at 76.617 kb on - strandat 76.761 kb on - strandat 76.763 kb on - strandat 76.770 kb on - strandat 76.785 kb on + strandat 76.912 kb on + strand, within HMPREF1058_RS12570at 76.913 kb on - strand, within HMPREF1058_RS12570at 76.913 kb on - strand, within HMPREF1058_RS12570at 76.931 kb on + strand, within HMPREF1058_RS12570at 76.953 kb on - strand, within HMPREF1058_RS12570at 77.015 kb on - strand, within HMPREF1058_RS12570at 77.049 kb on + strand, within HMPREF1058_RS12570at 77.050 kb on - strand, within HMPREF1058_RS12570at 77.080 kb on + strand, within HMPREF1058_RS12570at 77.080 kb on + strand, within HMPREF1058_RS12570at 77.081 kb on - strand, within HMPREF1058_RS12570at 77.164 kb on + strandat 77.164 kb on + strandat 77.181 kb on - strandat 77.191 kb on + strandat 77.192 kb on - strandat 77.196 kb on - strandat 77.197 kb on + strandat 77.197 kb on + strandat 77.198 kb on - strandat 77.204 kb on + strandat 77.208 kb on + strandat 77.237 kb on + strandat 77.237 kb on + strandat 77.239 kb on + strandat 77.239 kb on + strandat 77.240 kb on - strandat 77.244 kb on + strandat 77.244 kb on + strandat 77.255 kb on - strandat 77.571 kb on + strand, within HMPREF1058_RS12565at 77.699 kb on - strandat 77.701 kb on - strandat 77.732 kb on - strandat 77.734 kb on - strandat 77.738 kb on - strandat 77.841 kb on - strandat 77.843 kb on + strandat 77.857 kb on - strandat 77.867 kb on + strandat 77.868 kb on - strandat 77.898 kb on - strandat 77.909 kb on + strandat 77.965 kb on + strandat 78.010 kb on + strandat 78.015 kb on + strandat 78.016 kb on - strandat 78.019 kb on + strandat 78.030 kb on - strand, within HMPREF1058_RS12560at 78.129 kb on - strand, within HMPREF1058_RS12560at 78.152 kb on + strand, within HMPREF1058_RS12560at 78.152 kb on + strand, within HMPREF1058_RS12560at 78.153 kb on - strand, within HMPREF1058_RS12560at 78.153 kb on - strand, within HMPREF1058_RS12560at 78.156 kb on + strand, within HMPREF1058_RS12560at 78.156 kb on + strand, within HMPREF1058_RS12560at 78.157 kb on - strand, within HMPREF1058_RS12560at 78.159 kb on + strand, within HMPREF1058_RS12560at 78.159 kb on + strand, within HMPREF1058_RS12560at 78.160 kb on - strand, within HMPREF1058_RS12560

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2
remove
75,843 - HMPREF1058_RS12575 0.18 -4.0
75,847 + HMPREF1058_RS12575 0.19 -0.0
75,848 - HMPREF1058_RS12575 0.19 +0.3
75,934 - HMPREF1058_RS12575 0.27 -0.9
75,949 + HMPREF1058_RS12575 0.28 -0.9
75,954 + HMPREF1058_RS12575 0.29 -1.5
76,088 + HMPREF1058_RS12575 0.42 -0.6
76,089 - HMPREF1058_RS12575 0.42 -1.9
76,089 - HMPREF1058_RS12575 0.42 -0.6
76,089 - HMPREF1058_RS12575 0.42 -0.8
76,089 - HMPREF1058_RS12575 0.42 -1.9
76,093 - HMPREF1058_RS12575 0.42 -0.5
76,126 + HMPREF1058_RS12575 0.45 +0.3
76,127 - HMPREF1058_RS12575 0.45 +1.8
76,170 - HMPREF1058_RS12575 0.50 -2.2
76,250 + HMPREF1058_RS12575 0.57 +0.0
76,251 - HMPREF1058_RS12575 0.57 +0.2
76,263 + HMPREF1058_RS12575 0.59 -4.6
76,264 - HMPREF1058_RS12575 0.59 -3.4
76,270 - HMPREF1058_RS12575 0.59 -0.9
76,356 + HMPREF1058_RS12575 0.67 -0.4
76,433 + HMPREF1058_RS12575 0.75 -3.0
76,434 - HMPREF1058_RS12575 0.75 -0.3
76,434 - HMPREF1058_RS12575 0.75 -0.6
76,454 - HMPREF1058_RS12575 0.77 -0.5
76,454 - HMPREF1058_RS12575 0.77 -1.3
76,460 + HMPREF1058_RS12575 0.77 -0.2
76,460 + HMPREF1058_RS12575 0.77 +0.6
76,491 - HMPREF1058_RS12575 0.80 -4.2
76,511 + HMPREF1058_RS12575 0.82 -1.4
76,512 - HMPREF1058_RS12575 0.82 -0.4
76,514 - HMPREF1058_RS12575 0.83 +0.4
76,516 - HMPREF1058_RS12575 0.83 -2.1
76,522 + HMPREF1058_RS12575 0.83 -1.4
76,523 - HMPREF1058_RS12575 0.83 -0.2
76,527 + HMPREF1058_RS12575 0.84 -0.2
76,528 - HMPREF1058_RS12575 0.84 -2.8
76,532 + HMPREF1058_RS12575 0.84 -0.7
76,533 - HMPREF1058_RS12575 0.84 -1.1
76,535 + HMPREF1058_RS12575 0.85 -1.6
76,536 - HMPREF1058_RS12575 0.85 -1.7
76,539 - HMPREF1058_RS12575 0.85 -2.0
76,566 - HMPREF1058_RS12575 0.88 +0.7
76,574 + HMPREF1058_RS12575 0.88 +0.6
76,575 - HMPREF1058_RS12575 0.88 -1.9
76,586 + HMPREF1058_RS12575 0.89 -2.1
76,617 - -2.1
76,761 - -0.5
76,763 - +2.0
76,770 - -0.8
76,785 + +1.6
76,912 + HMPREF1058_RS12570 0.31 +3.7
76,913 - HMPREF1058_RS12570 0.32 -1.8
76,913 - HMPREF1058_RS12570 0.32 -0.4
76,931 + HMPREF1058_RS12570 0.36 -0.1
76,953 - HMPREF1058_RS12570 0.41 +0.4
77,015 - HMPREF1058_RS12570 0.57 -0.8
77,049 + HMPREF1058_RS12570 0.65 +1.5
77,050 - HMPREF1058_RS12570 0.65 +1.1
77,080 + HMPREF1058_RS12570 0.73 -1.8
77,080 + HMPREF1058_RS12570 0.73 +1.5
77,081 - HMPREF1058_RS12570 0.73 -0.5
77,164 + -2.1
77,164 + -1.6
77,181 - +1.2
77,191 + -1.6
77,192 - -0.8
77,196 - +0.3
77,197 + -1.5
77,197 + -1.4
77,198 - +0.4
77,204 + -2.1
77,208 + +1.8
77,237 + -0.9
77,237 + +1.3
77,239 + +0.9
77,239 + -1.4
77,240 - -2.3
77,244 + +0.7
77,244 + +0.8
77,255 - +0.2
77,571 + HMPREF1058_RS12565 0.71 -0.8
77,699 - +2.2
77,701 - +0.2
77,732 - -0.4
77,734 - +1.5
77,738 - -3.7
77,841 - -0.4
77,843 + -1.4
77,857 - -0.8
77,867 + -2.0
77,868 - -0.9
77,898 - +0.1
77,909 + -3.6
77,965 + +0.3
78,010 + -4.9
78,015 + -0.8
78,016 - -2.8
78,019 + +1.1
78,030 - HMPREF1058_RS12560 0.11 -0.0
78,129 - HMPREF1058_RS12560 0.19 -3.8
78,152 + HMPREF1058_RS12560 0.21 +0.3
78,152 + HMPREF1058_RS12560 0.21 -0.4
78,153 - HMPREF1058_RS12560 0.21 +1.1
78,153 - HMPREF1058_RS12560 0.21 -0.1
78,156 + HMPREF1058_RS12560 0.22 -1.1
78,156 + HMPREF1058_RS12560 0.22 +1.2
78,157 - HMPREF1058_RS12560 0.22 -0.4
78,159 + HMPREF1058_RS12560 0.22 -1.0
78,159 + HMPREF1058_RS12560 0.22 +0.5
78,160 - HMPREF1058_RS12560 0.22 -0.2

Or see this region's nucleotide sequence