Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS10805 and HMPREF1058_RS10800 are separated by 69 nucleotides HMPREF1058_RS10800 and HMPREF1058_RS10795 are separated by 245 nucleotides HMPREF1058_RS10795 and HMPREF1058_RS10790 overlap by 1 nucleotides
HMPREF1058_RS10805: HMPREF1058_RS10805 - FecR family protein, at 559,088 to 559,891
_RS10805
HMPREF1058_RS10800: HMPREF1058_RS10800 - RNA polymerase sigma-70 factor, at 559,961 to 560,470
_RS10800
HMPREF1058_RS10795: HMPREF1058_RS10795 - SusD/RagB family nutrient-binding outer membrane lipoprotein, at 560,716 to 562,419
_RS10795
HMPREF1058_RS10790: HMPREF1058_RS10790 - SusC/RagA family TonB-linked outer membrane protein, at 562,419 to 565,460
_RS10790
Position (kb) 560
561
562
563 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 559.765 kb on + strand, within HMPREF1058_RS10805 at 559.766 kb on - strand, within HMPREF1058_RS10805 at 559.767 kb on + strand, within HMPREF1058_RS10805 at 559.767 kb on + strand, within HMPREF1058_RS10805 at 559.767 kb on + strand, within HMPREF1058_RS10805 at 559.767 kb on + strand, within HMPREF1058_RS10805 at 559.768 kb on - strand, within HMPREF1058_RS10805 at 559.770 kb on - strand, within HMPREF1058_RS10805 at 559.770 kb on - strand, within HMPREF1058_RS10805 at 559.773 kb on - strand, within HMPREF1058_RS10805 at 559.773 kb on - strand, within HMPREF1058_RS10805 at 559.778 kb on - strand at 559.778 kb on - strand, within HMPREF1058_RS10805 at 559.916 kb on - strand at 559.982 kb on + strand at 560.080 kb on - strand, within HMPREF1058_RS10800 at 560.083 kb on + strand, within HMPREF1058_RS10800 at 560.083 kb on + strand, within HMPREF1058_RS10800 at 560.276 kb on + strand, within HMPREF1058_RS10800 at 560.277 kb on - strand, within HMPREF1058_RS10800 at 560.290 kb on + strand, within HMPREF1058_RS10800 at 560.291 kb on - strand, within HMPREF1058_RS10800 at 560.311 kb on + strand, within HMPREF1058_RS10800 at 560.312 kb on - strand, within HMPREF1058_RS10800 at 560.393 kb on - strand, within HMPREF1058_RS10800 at 560.406 kb on + strand, within HMPREF1058_RS10800 at 560.407 kb on - strand, within HMPREF1058_RS10800 at 560.407 kb on - strand, within HMPREF1058_RS10800 at 560.462 kb on + strand at 560.463 kb on - strand at 560.664 kb on - strand at 560.674 kb on + strand at 560.674 kb on + strand at 560.718 kb on - strand at 560.849 kb on + strand at 560.850 kb on - strand at 561.058 kb on + strand, within HMPREF1058_RS10795 at 561.064 kb on + strand, within HMPREF1058_RS10795 at 561.064 kb on + strand, within HMPREF1058_RS10795 at 561.065 kb on - strand, within HMPREF1058_RS10795 at 561.111 kb on + strand, within HMPREF1058_RS10795 at 561.111 kb on + strand, within HMPREF1058_RS10795 at 561.114 kb on - strand, within HMPREF1058_RS10795 at 561.144 kb on - strand, within HMPREF1058_RS10795 at 561.203 kb on - strand, within HMPREF1058_RS10795 at 561.435 kb on - strand, within HMPREF1058_RS10795 at 561.452 kb on - strand, within HMPREF1058_RS10795 at 561.501 kb on + strand, within HMPREF1058_RS10795 at 561.503 kb on + strand, within HMPREF1058_RS10795 at 561.503 kb on + strand, within HMPREF1058_RS10795 at 561.504 kb on - strand, within HMPREF1058_RS10795 at 561.505 kb on + strand, within HMPREF1058_RS10795 at 561.540 kb on + strand, within HMPREF1058_RS10795 at 561.541 kb on - strand, within HMPREF1058_RS10795 at 561.770 kb on - strand, within HMPREF1058_RS10795 at 561.885 kb on - strand, within HMPREF1058_RS10795 at 561.998 kb on - strand, within HMPREF1058_RS10795 at 562.089 kb on - strand, within HMPREF1058_RS10795 at 562.097 kb on + strand, within HMPREF1058_RS10795 at 562.238 kb on + strand, within HMPREF1058_RS10795 at 562.294 kb on + strand at 562.294 kb on + strand at 562.295 kb on - strand at 562.329 kb on + strand at 562.383 kb on - strand at 562.461 kb on - strand at 562.475 kb on + strand at 562.480 kb on - strand at 562.480 kb on - strand at 562.480 kb on - strand at 562.718 kb on - strand at 562.754 kb on + strand, within HMPREF1058_RS10790 at 562.755 kb on - strand, within HMPREF1058_RS10790 at 562.824 kb on - strand, within HMPREF1058_RS10790 at 562.925 kb on + strand, within HMPREF1058_RS10790 at 562.926 kb on - strand, within HMPREF1058_RS10790 at 562.966 kb on - strand, within HMPREF1058_RS10790 at 563.028 kb on + strand, within HMPREF1058_RS10790 at 563.029 kb on - strand, within HMPREF1058_RS10790 at 563.118 kb on + strand, within HMPREF1058_RS10790 at 563.136 kb on - strand, within HMPREF1058_RS10790 at 563.145 kb on - strand, within HMPREF1058_RS10790 at 563.247 kb on + strand, within HMPREF1058_RS10790 at 563.248 kb on - strand, within HMPREF1058_RS10790 at 563.248 kb on - strand, within HMPREF1058_RS10790 at 563.361 kb on - strand, within HMPREF1058_RS10790
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 remove 559,765 + HMPREF1058_RS10805 0.84 -4.3 559,766 - HMPREF1058_RS10805 0.84 +0.6 559,767 + HMPREF1058_RS10805 0.84 +1.3 559,767 + HMPREF1058_RS10805 0.84 -1.1 559,767 + HMPREF1058_RS10805 0.84 -0.3 559,767 + HMPREF1058_RS10805 0.84 -1.2 559,768 - HMPREF1058_RS10805 0.85 +2.2 559,770 - HMPREF1058_RS10805 0.85 +4.8 559,770 - HMPREF1058_RS10805 0.85 +0.5 559,773 - HMPREF1058_RS10805 0.85 -3.7 559,773 - HMPREF1058_RS10805 0.85 +1.0 559,778 - -1.7 559,778 - HMPREF1058_RS10805 0.86 +0.2 559,916 - -1.3 559,982 + -3.9 560,080 - HMPREF1058_RS10800 0.23 -0.1 560,083 + HMPREF1058_RS10800 0.24 -0.9 560,083 + HMPREF1058_RS10800 0.24 -0.7 560,276 + HMPREF1058_RS10800 0.62 -2.5 560,277 - HMPREF1058_RS10800 0.62 -2.7 560,290 + HMPREF1058_RS10800 0.65 -0.9 560,291 - HMPREF1058_RS10800 0.65 +0.7 560,311 + HMPREF1058_RS10800 0.69 +0.1 560,312 - HMPREF1058_RS10800 0.69 +1.1 560,393 - HMPREF1058_RS10800 0.85 +1.4 560,406 + HMPREF1058_RS10800 0.87 -2.5 560,407 - HMPREF1058_RS10800 0.87 +1.4 560,407 - HMPREF1058_RS10800 0.87 +2.1 560,462 + +0.3 560,463 - -1.7 560,664 - -1.4 560,674 + -2.9 560,674 + +2.1 560,718 - -1.0 560,849 + -0.6 560,850 - +1.6 561,058 + HMPREF1058_RS10795 0.20 -0.2 561,064 + HMPREF1058_RS10795 0.20 -4.8 561,064 + HMPREF1058_RS10795 0.20 +0.1 561,065 - HMPREF1058_RS10795 0.20 -1.2 561,111 + HMPREF1058_RS10795 0.23 -0.3 561,111 + HMPREF1058_RS10795 0.23 -0.7 561,114 - HMPREF1058_RS10795 0.23 -1.3 561,144 - HMPREF1058_RS10795 0.25 -2.0 561,203 - HMPREF1058_RS10795 0.29 +1.2 561,435 - HMPREF1058_RS10795 0.42 +0.0 561,452 - HMPREF1058_RS10795 0.43 -0.9 561,501 + HMPREF1058_RS10795 0.46 -1.0 561,503 + HMPREF1058_RS10795 0.46 +0.5 561,503 + HMPREF1058_RS10795 0.46 -1.7 561,504 - HMPREF1058_RS10795 0.46 -1.7 561,505 + HMPREF1058_RS10795 0.46 -1.4 561,540 + HMPREF1058_RS10795 0.48 +0.7 561,541 - HMPREF1058_RS10795 0.48 -2.1 561,770 - HMPREF1058_RS10795 0.62 +0.3 561,885 - HMPREF1058_RS10795 0.69 -1.4 561,998 - HMPREF1058_RS10795 0.75 +0.1 562,089 - HMPREF1058_RS10795 0.81 -3.3 562,097 + HMPREF1058_RS10795 0.81 -2.7 562,238 + HMPREF1058_RS10795 0.89 +0.3 562,294 + -0.5 562,294 + -1.1 562,295 - -1.0 562,329 + +2.1 562,383 - -0.5 562,461 - -0.3 562,475 + +1.6 562,480 - -0.3 562,480 - +0.2 562,480 - +1.6 562,718 - +0.7 562,754 + HMPREF1058_RS10790 0.11 +1.9 562,755 - HMPREF1058_RS10790 0.11 -2.3 562,824 - HMPREF1058_RS10790 0.13 +0.7 562,925 + HMPREF1058_RS10790 0.17 +0.5 562,926 - HMPREF1058_RS10790 0.17 +1.7 562,966 - HMPREF1058_RS10790 0.18 -1.7 563,028 + HMPREF1058_RS10790 0.20 +0.3 563,029 - HMPREF1058_RS10790 0.20 +0.3 563,118 + HMPREF1058_RS10790 0.23 -3.6 563,136 - HMPREF1058_RS10790 0.24 -2.1 563,145 - HMPREF1058_RS10790 0.24 +0.7 563,247 + HMPREF1058_RS10790 0.27 -3.6 563,248 - HMPREF1058_RS10790 0.27 +0.3 563,248 - HMPREF1058_RS10790 0.27 -2.3 563,361 - HMPREF1058_RS10790 0.31 -2.0
Or see this region's nucleotide sequence