Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS00065 and HMPREF1058_RS00060 are separated by 85 nucleotides HMPREF1058_RS00060 and HMPREF1058_RS21730 are separated by 91 nucleotides
HMPREF1058_RS00065: HMPREF1058_RS00065 - family 78 glycoside hydrolase catalytic domain, at 74,677 to 76,458
_RS00065
HMPREF1058_RS00060: HMPREF1058_RS00060 - RagB/SusD family nutrient uptake outer membrane protein, at 76,544 to 77,533
_RS00060
HMPREF1058_RS21730: HMPREF1058_RS21730 - hypothetical protein, at 77,625 to 77,792
_RS21730
Position (kb) 76
77
78 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 75.551 kb on + strand, within HMPREF1058_RS00065 at 75.560 kb on + strand, within HMPREF1058_RS00065 at 75.694 kb on + strand, within HMPREF1058_RS00065 at 75.780 kb on + strand, within HMPREF1058_RS00065 at 75.781 kb on - strand, within HMPREF1058_RS00065 at 75.781 kb on - strand, within HMPREF1058_RS00065 at 75.799 kb on + strand, within HMPREF1058_RS00065 at 75.985 kb on - strand, within HMPREF1058_RS00065 at 76.044 kb on + strand, within HMPREF1058_RS00065 at 76.079 kb on - strand, within HMPREF1058_RS00065 at 76.199 kb on - strand, within HMPREF1058_RS00065 at 76.276 kb on - strand, within HMPREF1058_RS00065 at 76.305 kb on + strand at 76.322 kb on + strand at 76.322 kb on + strand at 76.323 kb on - strand at 76.323 kb on - strand at 76.339 kb on - strand at 76.396 kb on + strand at 76.451 kb on - strand at 76.462 kb on - strand at 76.488 kb on - strand at 76.507 kb on + strand at 76.508 kb on - strand at 76.538 kb on + strand at 76.571 kb on + strand at 76.571 kb on + strand at 76.571 kb on + strand at 76.585 kb on + strand at 76.616 kb on + strand at 76.626 kb on - strand at 76.650 kb on + strand, within HMPREF1058_RS00060 at 76.653 kb on + strand, within HMPREF1058_RS00060 at 76.734 kb on - strand, within HMPREF1058_RS00060 at 76.756 kb on + strand, within HMPREF1058_RS00060 at 76.756 kb on + strand, within HMPREF1058_RS00060 at 76.807 kb on - strand, within HMPREF1058_RS00060 at 76.865 kb on - strand, within HMPREF1058_RS00060 at 76.870 kb on + strand, within HMPREF1058_RS00060 at 76.933 kb on + strand, within HMPREF1058_RS00060 at 77.060 kb on + strand, within HMPREF1058_RS00060 at 77.061 kb on - strand, within HMPREF1058_RS00060 at 77.064 kb on + strand, within HMPREF1058_RS00060 at 77.065 kb on - strand, within HMPREF1058_RS00060 at 77.065 kb on - strand, within HMPREF1058_RS00060 at 77.081 kb on + strand, within HMPREF1058_RS00060 at 77.138 kb on + strand, within HMPREF1058_RS00060 at 77.141 kb on - strand, within HMPREF1058_RS00060 at 77.215 kb on + strand, within HMPREF1058_RS00060 at 77.279 kb on + strand, within HMPREF1058_RS00060 at 77.303 kb on - strand, within HMPREF1058_RS00060 at 77.341 kb on + strand, within HMPREF1058_RS00060 at 77.368 kb on + strand, within HMPREF1058_RS00060 at 77.379 kb on + strand, within HMPREF1058_RS00060 at 77.419 kb on + strand, within HMPREF1058_RS00060 at 77.420 kb on - strand, within HMPREF1058_RS00060 at 77.421 kb on + strand, within HMPREF1058_RS00060 at 77.422 kb on - strand, within HMPREF1058_RS00060 at 77.479 kb on + strand at 77.480 kb on - strand at 77.481 kb on + strand at 77.482 kb on - strand at 77.482 kb on - strand at 77.482 kb on - strand at 77.482 kb on - strand at 77.486 kb on - strand at 77.596 kb on + strand at 77.597 kb on - strand at 77.597 kb on - strand at 77.645 kb on + strand, within HMPREF1058_RS21730 at 77.646 kb on - strand, within HMPREF1058_RS21730 at 77.730 kb on + strand, within HMPREF1058_RS21730 at 77.730 kb on + strand, within HMPREF1058_RS21730 at 77.732 kb on + strand, within HMPREF1058_RS21730 at 77.810 kb on + strand at 77.939 kb on - strand at 77.971 kb on + strand at 77.971 kb on + strand at 77.972 kb on - strand at 77.995 kb on - strand at 77.998 kb on + strand at 77.998 kb on + strand at 78.051 kb on + strand at 78.052 kb on - strand at 78.125 kb on - strand at 78.142 kb on - strand at 78.174 kb on - strand at 78.176 kb on + strand at 78.177 kb on - strand at 78.187 kb on + strand at 78.187 kb on + strand at 78.209 kb on + strand at 78.215 kb on - strand at 78.218 kb on + strand at 78.220 kb on - strand at 78.287 kb on - strand at 78.291 kb on + strand at 78.309 kb on - strand at 78.381 kb on + strand at 78.399 kb on - strand at 78.399 kb on - strand at 78.401 kb on - strand at 78.401 kb on - strand at 78.427 kb on + strand at 78.429 kb on + strand at 78.429 kb on + strand at 78.429 kb on + strand at 78.431 kb on + strand at 78.432 kb on - strand at 78.433 kb on + strand at 78.434 kb on - strand at 78.487 kb on + strand at 78.489 kb on + strand at 78.489 kb on + strand at 78.489 kb on + strand at 78.528 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse5; day2 remove 75,551 + HMPREF1058_RS00065 0.49 +1.5 75,560 + HMPREF1058_RS00065 0.50 -0.4 75,694 + HMPREF1058_RS00065 0.57 +0.0 75,780 + HMPREF1058_RS00065 0.62 +2.1 75,781 - HMPREF1058_RS00065 0.62 -0.2 75,781 - HMPREF1058_RS00065 0.62 +0.4 75,799 + HMPREF1058_RS00065 0.63 -0.0 75,985 - HMPREF1058_RS00065 0.73 -2.5 76,044 + HMPREF1058_RS00065 0.77 -2.9 76,079 - HMPREF1058_RS00065 0.79 +2.8 76,199 - HMPREF1058_RS00065 0.85 -0.6 76,276 - HMPREF1058_RS00065 0.90 -0.8 76,305 + -0.4 76,322 + +0.0 76,322 + +0.4 76,323 - +0.1 76,323 - -0.6 76,339 - -0.3 76,396 + +1.4 76,451 - -0.6 76,462 - +1.1 76,488 - -3.1 76,507 + -2.2 76,508 - -1.2 76,538 + -1.9 76,571 + +0.4 76,571 + -0.5 76,571 + -0.9 76,585 + +0.6 76,616 + +0.4 76,626 - -1.7 76,650 + HMPREF1058_RS00060 0.11 +0.4 76,653 + HMPREF1058_RS00060 0.11 -0.9 76,734 - HMPREF1058_RS00060 0.19 +0.4 76,756 + HMPREF1058_RS00060 0.21 -0.4 76,756 + HMPREF1058_RS00060 0.21 -0.7 76,807 - HMPREF1058_RS00060 0.27 -0.9 76,865 - HMPREF1058_RS00060 0.32 +0.6 76,870 + HMPREF1058_RS00060 0.33 -0.0 76,933 + HMPREF1058_RS00060 0.39 +0.7 77,060 + HMPREF1058_RS00060 0.52 -0.7 77,061 - HMPREF1058_RS00060 0.52 -0.6 77,064 + HMPREF1058_RS00060 0.53 -1.9 77,065 - HMPREF1058_RS00060 0.53 -1.6 77,065 - HMPREF1058_RS00060 0.53 +0.4 77,081 + HMPREF1058_RS00060 0.54 +3.7 77,138 + HMPREF1058_RS00060 0.60 -0.6 77,141 - HMPREF1058_RS00060 0.60 -0.1 77,215 + HMPREF1058_RS00060 0.68 -1.9 77,279 + HMPREF1058_RS00060 0.74 -3.1 77,303 - HMPREF1058_RS00060 0.77 -3.4 77,341 + HMPREF1058_RS00060 0.81 -0.6 77,368 + HMPREF1058_RS00060 0.83 -1.9 77,379 + HMPREF1058_RS00060 0.84 +1.8 77,419 + HMPREF1058_RS00060 0.88 +1.0 77,420 - HMPREF1058_RS00060 0.88 -2.1 77,421 + HMPREF1058_RS00060 0.89 -1.6 77,422 - HMPREF1058_RS00060 0.89 +1.0 77,479 + -1.2 77,480 - -0.6 77,481 + +0.8 77,482 - +1.6 77,482 - -0.6 77,482 - +0.9 77,482 - +0.4 77,486 - -1.9 77,596 + +0.4 77,597 - -0.1 77,597 - +0.4 77,645 + HMPREF1058_RS21730 0.12 +0.1 77,646 - HMPREF1058_RS21730 0.12 +0.7 77,730 + HMPREF1058_RS21730 0.62 +0.6 77,730 + HMPREF1058_RS21730 0.62 +1.0 77,732 + HMPREF1058_RS21730 0.64 +1.4 77,810 + +0.4 77,939 - -0.3 77,971 + -1.2 77,971 + -1.9 77,972 - -0.1 77,995 - +2.0 77,998 + +0.3 77,998 + -2.6 78,051 + -0.0 78,052 - +0.9 78,125 - -2.2 78,142 - +0.2 78,174 - -0.4 78,176 + +0.4 78,177 - +2.9 78,187 + +0.4 78,187 + -0.6 78,209 + -0.8 78,215 - +0.4 78,218 + -2.2 78,220 - +1.7 78,287 - -2.6 78,291 + +0.0 78,309 - -3.7 78,381 + -0.6 78,399 - +0.2 78,399 - +0.7 78,401 - -3.2 78,401 - -0.2 78,427 + +0.6 78,429 + +5.0 78,429 + +0.3 78,429 + -1.2 78,431 + -3.4 78,432 - +0.3 78,433 + +1.2 78,434 - +1.9 78,487 + -2.6 78,489 + -0.2 78,489 + +1.1 78,489 + -0.6 78,528 + -1.5
Or see this region's nucleotide sequence