Experiment: diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04870 and HMPREF1058_RS04865 are separated by 172 nucleotides HMPREF1058_RS04865 and HMPREF1058_RS04860 are separated by 41 nucleotides HMPREF1058_RS04860 and HMPREF1058_RS04855 are separated by 91 nucleotides
HMPREF1058_RS04870: HMPREF1058_RS04870 - RhsIA family immunity protein, at 299,338 to 300,315
_RS04870
HMPREF1058_RS04865: HMPREF1058_RS04865 - hypothetical protein, at 300,488 to 300,955
_RS04865
HMPREF1058_RS04860: HMPREF1058_RS04860 - hypothetical protein, at 300,997 to 301,428
_RS04860
HMPREF1058_RS04855: HMPREF1058_RS04855 - immunity 22 family protein, at 301,520 to 302,416
_RS04855
Position (kb) 300
301
302 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 300.073 kb on + strand, within HMPREF1058_RS04870 at 300.123 kb on - strand, within HMPREF1058_RS04870 at 300.197 kb on - strand, within HMPREF1058_RS04870 at 300.197 kb on - strand, within HMPREF1058_RS04870 at 300.372 kb on - strand at 300.389 kb on + strand at 300.389 kb on + strand at 300.420 kb on + strand at 300.420 kb on + strand at 300.475 kb on + strand at 300.550 kb on - strand, within HMPREF1058_RS04865 at 300.550 kb on - strand, within HMPREF1058_RS04865 at 300.595 kb on - strand, within HMPREF1058_RS04865 at 300.596 kb on + strand, within HMPREF1058_RS04865 at 300.596 kb on + strand, within HMPREF1058_RS04865 at 300.597 kb on - strand, within HMPREF1058_RS04865 at 300.597 kb on - strand, within HMPREF1058_RS04865 at 300.597 kb on - strand, within HMPREF1058_RS04865 at 300.633 kb on + strand, within HMPREF1058_RS04865 at 300.639 kb on + strand, within HMPREF1058_RS04865 at 300.639 kb on + strand, within HMPREF1058_RS04865 at 300.640 kb on - strand, within HMPREF1058_RS04865 at 300.640 kb on - strand, within HMPREF1058_RS04865 at 300.645 kb on + strand, within HMPREF1058_RS04865 at 300.646 kb on - strand, within HMPREF1058_RS04865 at 300.646 kb on - strand, within HMPREF1058_RS04865 at 300.646 kb on - strand, within HMPREF1058_RS04865 at 300.657 kb on - strand, within HMPREF1058_RS04865 at 300.657 kb on - strand, within HMPREF1058_RS04865 at 300.666 kb on - strand, within HMPREF1058_RS04865 at 300.672 kb on + strand, within HMPREF1058_RS04865 at 300.672 kb on + strand, within HMPREF1058_RS04865 at 300.673 kb on - strand, within HMPREF1058_RS04865 at 300.728 kb on - strand, within HMPREF1058_RS04865 at 300.749 kb on - strand, within HMPREF1058_RS04865 at 300.755 kb on - strand, within HMPREF1058_RS04865 at 300.771 kb on + strand, within HMPREF1058_RS04865 at 300.920 kb on - strand at 300.922 kb on - strand at 300.925 kb on + strand at 300.930 kb on + strand at 300.930 kb on + strand at 300.931 kb on - strand at 300.946 kb on + strand at 300.946 kb on + strand at 300.983 kb on - strand at 300.987 kb on + strand at 301.021 kb on - strand at 301.071 kb on - strand, within HMPREF1058_RS04860 at 301.084 kb on - strand, within HMPREF1058_RS04860 at 301.198 kb on - strand, within HMPREF1058_RS04860 at 301.201 kb on - strand, within HMPREF1058_RS04860 at 301.204 kb on - strand, within HMPREF1058_RS04860 at 301.206 kb on - strand, within HMPREF1058_RS04860 at 301.206 kb on - strand, within HMPREF1058_RS04860 at 301.264 kb on - strand, within HMPREF1058_RS04860 at 301.269 kb on - strand, within HMPREF1058_RS04860 at 301.305 kb on + strand, within HMPREF1058_RS04860 at 301.337 kb on - strand, within HMPREF1058_RS04860 at 301.338 kb on + strand, within HMPREF1058_RS04860 at 301.338 kb on + strand, within HMPREF1058_RS04860 at 301.338 kb on + strand, within HMPREF1058_RS04860 at 301.338 kb on + strand, within HMPREF1058_RS04860 at 301.340 kb on + strand, within HMPREF1058_RS04860 at 301.370 kb on + strand, within HMPREF1058_RS04860 at 301.444 kb on - strand at 301.525 kb on + strand at 301.533 kb on - strand at 301.533 kb on - strand at 301.577 kb on + strand at 301.581 kb on + strand at 301.582 kb on - strand at 301.582 kb on - strand at 301.627 kb on + strand, within HMPREF1058_RS04855 at 301.632 kb on + strand, within HMPREF1058_RS04855 at 301.639 kb on - strand, within HMPREF1058_RS04855 at 301.664 kb on - strand, within HMPREF1058_RS04855 at 301.668 kb on + strand, within HMPREF1058_RS04855 at 301.719 kb on + strand, within HMPREF1058_RS04855 at 301.720 kb on - strand, within HMPREF1058_RS04855 at 301.747 kb on + strand, within HMPREF1058_RS04855 at 301.762 kb on - strand, within HMPREF1058_RS04855 at 301.770 kb on + strand, within HMPREF1058_RS04855 at 301.771 kb on - strand, within HMPREF1058_RS04855 at 301.815 kb on - strand, within HMPREF1058_RS04855 at 301.833 kb on + strand, within HMPREF1058_RS04855 at 301.834 kb on - strand, within HMPREF1058_RS04855 at 301.840 kb on + strand, within HMPREF1058_RS04855 at 301.841 kb on - strand, within HMPREF1058_RS04855 at 301.841 kb on - strand, within HMPREF1058_RS04855 at 301.859 kb on - strand, within HMPREF1058_RS04855 at 301.913 kb on - strand, within HMPREF1058_RS04855 at 301.915 kb on - strand, within HMPREF1058_RS04855 at 301.915 kb on - strand, within HMPREF1058_RS04855 at 301.967 kb on - strand, within HMPREF1058_RS04855 at 302.071 kb on - strand, within HMPREF1058_RS04855 at 302.148 kb on + strand, within HMPREF1058_RS04855 at 302.148 kb on + strand, within HMPREF1058_RS04855 at 302.198 kb on + strand, within HMPREF1058_RS04855 at 302.262 kb on - strand, within HMPREF1058_RS04855 at 302.325 kb on + strand, within HMPREF1058_RS04855 at 302.376 kb on - strand at 302.378 kb on - strand at 302.404 kb on + strand at 302.404 kb on + strand at 302.404 kb on + strand at 302.423 kb on + strand at 302.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; inoculation=MixComm; mouse2; day2 remove 300,073 + HMPREF1058_RS04870 0.75 -1.9 300,123 - HMPREF1058_RS04870 0.80 +0.1 300,197 - HMPREF1058_RS04870 0.88 -3.2 300,197 - HMPREF1058_RS04870 0.88 -0.0 300,372 - +1.1 300,389 + -0.5 300,389 + -0.4 300,420 + +1.1 300,420 + +1.1 300,475 + -2.2 300,550 - HMPREF1058_RS04865 0.13 -1.1 300,550 - HMPREF1058_RS04865 0.13 -0.2 300,595 - HMPREF1058_RS04865 0.23 -2.5 300,596 + HMPREF1058_RS04865 0.23 -1.2 300,596 + HMPREF1058_RS04865 0.23 +2.6 300,597 - HMPREF1058_RS04865 0.23 -1.9 300,597 - HMPREF1058_RS04865 0.23 +0.5 300,597 - HMPREF1058_RS04865 0.23 -1.9 300,633 + HMPREF1058_RS04865 0.31 -1.0 300,639 + HMPREF1058_RS04865 0.32 -2.9 300,639 + HMPREF1058_RS04865 0.32 -2.2 300,640 - HMPREF1058_RS04865 0.32 -0.5 300,640 - HMPREF1058_RS04865 0.32 +1.3 300,645 + HMPREF1058_RS04865 0.34 -2.2 300,646 - HMPREF1058_RS04865 0.34 +0.4 300,646 - HMPREF1058_RS04865 0.34 +1.4 300,646 - HMPREF1058_RS04865 0.34 -1.0 300,657 - HMPREF1058_RS04865 0.36 -0.4 300,657 - HMPREF1058_RS04865 0.36 -2.1 300,666 - HMPREF1058_RS04865 0.38 +0.3 300,672 + HMPREF1058_RS04865 0.39 +0.1 300,672 + HMPREF1058_RS04865 0.39 +0.1 300,673 - HMPREF1058_RS04865 0.40 +0.7 300,728 - HMPREF1058_RS04865 0.51 -0.3 300,749 - HMPREF1058_RS04865 0.56 -2.6 300,755 - HMPREF1058_RS04865 0.57 -2.8 300,771 + HMPREF1058_RS04865 0.60 -1.5 300,920 - -1.9 300,922 - +0.1 300,925 + +2.1 300,930 + +0.8 300,930 + -2.2 300,931 - +2.7 300,946 + +0.9 300,946 + -1.0 300,983 - +0.6 300,987 + -0.1 301,021 - +1.6 301,071 - HMPREF1058_RS04860 0.17 +1.1 301,084 - HMPREF1058_RS04860 0.20 +0.1 301,198 - HMPREF1058_RS04860 0.47 +2.7 301,201 - HMPREF1058_RS04860 0.47 +2.1 301,204 - HMPREF1058_RS04860 0.48 -1.0 301,206 - HMPREF1058_RS04860 0.48 +0.7 301,206 - HMPREF1058_RS04860 0.48 -3.4 301,264 - HMPREF1058_RS04860 0.62 -1.5 301,269 - HMPREF1058_RS04860 0.63 +0.7 301,305 + HMPREF1058_RS04860 0.71 -2.0 301,337 - HMPREF1058_RS04860 0.79 -1.8 301,338 + HMPREF1058_RS04860 0.79 +0.6 301,338 + HMPREF1058_RS04860 0.79 -1.9 301,338 + HMPREF1058_RS04860 0.79 +0.3 301,338 + HMPREF1058_RS04860 0.79 -0.7 301,340 + HMPREF1058_RS04860 0.79 -0.6 301,370 + HMPREF1058_RS04860 0.86 +0.2 301,444 - -0.8 301,525 + +1.5 301,533 - -0.0 301,533 - +2.6 301,577 + -1.9 301,581 + +0.7 301,582 - -0.7 301,582 - -0.6 301,627 + HMPREF1058_RS04855 0.12 +3.8 301,632 + HMPREF1058_RS04855 0.12 +0.1 301,639 - HMPREF1058_RS04855 0.13 +1.4 301,664 - HMPREF1058_RS04855 0.16 -2.2 301,668 + HMPREF1058_RS04855 0.16 +0.1 301,719 + HMPREF1058_RS04855 0.22 +1.4 301,720 - HMPREF1058_RS04855 0.22 -0.1 301,747 + HMPREF1058_RS04855 0.25 -1.4 301,762 - HMPREF1058_RS04855 0.27 +0.8 301,770 + HMPREF1058_RS04855 0.28 -1.5 301,771 - HMPREF1058_RS04855 0.28 -0.5 301,815 - HMPREF1058_RS04855 0.33 +1.8 301,833 + HMPREF1058_RS04855 0.35 -0.3 301,834 - HMPREF1058_RS04855 0.35 +0.3 301,840 + HMPREF1058_RS04855 0.36 -2.2 301,841 - HMPREF1058_RS04855 0.36 +0.1 301,841 - HMPREF1058_RS04855 0.36 -1.9 301,859 - HMPREF1058_RS04855 0.38 -1.0 301,913 - HMPREF1058_RS04855 0.44 +0.7 301,915 - HMPREF1058_RS04855 0.44 +0.7 301,915 - HMPREF1058_RS04855 0.44 -0.6 301,967 - HMPREF1058_RS04855 0.50 +0.8 302,071 - HMPREF1058_RS04855 0.61 +1.4 302,148 + HMPREF1058_RS04855 0.70 -1.0 302,148 + HMPREF1058_RS04855 0.70 -0.9 302,198 + HMPREF1058_RS04855 0.76 +0.1 302,262 - HMPREF1058_RS04855 0.83 +0.1 302,325 + HMPREF1058_RS04855 0.90 -0.9 302,376 - -0.9 302,378 - +3.1 302,404 + -2.9 302,404 + -2.5 302,404 + -1.5 302,423 + -0.0 302,424 - +2.8
Or see this region's nucleotide sequence