Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS25400

Experiment: plant=Squash; plant sample=Q5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=Q5; plant location=P2
13,660	+	traW	LU632_RS25390	0.61	+0.4
13,661	-	traW	LU632_RS25390	0.61	+0.5
13,982	+	traW	LU632_RS25390	0.88	-0.3
14,023	-				+0.7
14,059	+				-0.8
14,059	+				-3.2
14,062	+				-1.1
14,062	+				-0.4
14,062	+				+1.0
14,062	+				-1.5
14,062	+				-0.7
14,062	+				+0.3
14,062	+				-1.8
14,063	-				-0.3
14,063	-				-1.2
14,063	-				+0.7
14,063	-				+2.0
14,063	-				-0.6
14,063	-				-1.5
14,129	-				+0.9
14,191	+	traX	LU632_RS25395	0.14	-0.3
14,192	-	traX	LU632_RS25395	0.14	+0.4
14,456	+	traX	LU632_RS25395	0.66	-0.7
14,456	+	traX	LU632_RS25395	0.66	-0.9
14,456	+	traX	LU632_RS25395	0.66	-0.3
14,456	+	traX	LU632_RS25395	0.66	-1.1
14,456	+	traX	LU632_RS25395	0.66	-1.5
14,456	+	traX	LU632_RS25395	0.66	+0.3
14,457	-	traX	LU632_RS25395	0.66	-1.5
14,457	-	traX	LU632_RS25395	0.66	+0.7
14,457	-	traX	LU632_RS25395	0.66	-1.4
14,598	-				-0.4
14,698	+				-0.6
14,704	+				-1.6
14,705	-				-1.0
14,757	-				-1.1
14,763	-				+0.1
14,820	-				-0.8
14,820	-				-0.6
14,890	-		LU632_RS25400	0.11	-1.1
14,906	+		LU632_RS25400	0.12	-0.9
14,906	+		LU632_RS25400	0.12	-0.6
14,910	-		LU632_RS25400	0.12	-1.4
14,962	+		LU632_RS25400	0.14	+0.7
14,986	+		LU632_RS25400	0.15	-0.7
14,986	+		LU632_RS25400	0.15	-0.4
14,986	+		LU632_RS25400	0.15	-0.5
14,986	+		LU632_RS25400	0.15	-0.7
14,986	+		LU632_RS25400	0.15	-0.6
15,000	-		LU632_RS25400	0.16	-2.3
15,038	+		LU632_RS25400	0.18	-0.3
15,039	-		LU632_RS25400	0.18	-0.1
15,091	+		LU632_RS25400	0.20	-0.4
15,091	-		LU632_RS25400	0.20	-0.3
15,130	+		LU632_RS25400	0.22	+1.2
15,131	-		LU632_RS25400	0.22	+0.7
15,179	+		LU632_RS25400	0.24	-1.2
15,179	+		LU632_RS25400	0.24	-1.6
15,179	+		LU632_RS25400	0.24	-1.5
15,179	+		LU632_RS25400	0.24	+0.9
15,234	+		LU632_RS25400	0.27	+0.7
15,234	+		LU632_RS25400	0.27	+0.7
15,234	+		LU632_RS25400	0.27	-1.0
15,234	+		LU632_RS25400	0.27	-1.6
15,234	+		LU632_RS25400	0.27	+0.7
15,234	+		LU632_RS25400	0.27	+0.7
15,234	+		LU632_RS25400	0.27	+2.4
15,235	-		LU632_RS25400	0.27	-0.6
15,235	-		LU632_RS25400	0.27	-0.2
15,235	-		LU632_RS25400	0.27	-1.0
15,235	-		LU632_RS25400	0.27	+0.4
15,235	-		LU632_RS25400	0.27	-0.6
15,235	-		LU632_RS25400	0.27	-1.9
15,290	+		LU632_RS25400	0.29	-0.9
15,290	+		LU632_RS25400	0.29	+0.2
15,291	-		LU632_RS25400	0.29	-1.8
15,341	-		LU632_RS25400	0.32	-0.3
15,478	+		LU632_RS25400	0.38	-0.1
15,532	-		LU632_RS25400	0.40	-2.1
15,597	+		LU632_RS25400	0.43	+0.2
15,611	+		LU632_RS25400	0.44	+0.1
15,612	-		LU632_RS25400	0.44	-1.2
15,670	-		LU632_RS25400	0.47	+1.7
15,722	+		LU632_RS25400	0.49	-2.5
15,740	+		LU632_RS25400	0.50	+0.7
15,743	+		LU632_RS25400	0.50	-0.4
15,743	+		LU632_RS25400	0.50	-2.3
15,786	-		LU632_RS25400	0.52	+0.4
15,802	+		LU632_RS25400	0.53	-1.6
15,803	-		LU632_RS25400	0.53	+0.2
15,874	+		LU632_RS25400	0.56	-1.3
15,902	+		LU632_RS25400	0.57	+0.7
15,903	-		LU632_RS25400	0.57	+1.1
15,937	+		LU632_RS25400	0.59	+1.7
15,940	+		LU632_RS25400	0.59	-1.6
15,940	+		LU632_RS25400	0.59	+0.1
15,941	-		LU632_RS25400	0.59	-2.5
15,941	-		LU632_RS25400	0.59	-0.8
15,941	-		LU632_RS25400	0.59	-1.1
15,964	+		LU632_RS25400	0.60	+0.2
15,965	-		LU632_RS25400	0.60	+0.8
16,039	+		LU632_RS25400	0.64	+0.7
16,039	+		LU632_RS25400	0.64	-0.8
16,062	+		LU632_RS25400	0.65	+0.9
16,064	+		LU632_RS25400	0.65	+1.7
16,064	+		LU632_RS25400	0.65	+0.1
16,065	-		LU632_RS25400	0.65	-3.6
16,065	-		LU632_RS25400	0.65	-0.4
16,065	-		LU632_RS25400	0.65	-0.3
16,065	-		LU632_RS25400	0.65	+0.7
16,091	+		LU632_RS25400	0.66	+0.5
16,109	+		LU632_RS25400	0.67	-0.7
16,157	+		LU632_RS25400	0.69	+0.8
16,158	-		LU632_RS25400	0.69	-1.1
16,165	+		LU632_RS25400	0.70	+0.8
16,180	-		LU632_RS25400	0.70	+0.2
16,180	-		LU632_RS25400	0.70	-0.9
16,195	+		LU632_RS25400	0.71	+0.4
16,207	+		LU632_RS25400	0.71	-1.6
16,219	+		LU632_RS25400	0.72	-0.3
16,220	-		LU632_RS25400	0.72	-0.6
16,231	+		LU632_RS25400	0.73	+0.4
16,232	-		LU632_RS25400	0.73	+0.8
16,232	-		LU632_RS25400	0.73	+0.1
16,237	+		LU632_RS25400	0.73	+0.5
16,250	-		LU632_RS25400	0.73	+0.1
16,250	-		LU632_RS25400	0.73	+0.7
16,293	+		LU632_RS25400	0.75	-0.3
16,302	-		LU632_RS25400	0.76	-0.7
16,310	+		LU632_RS25400	0.76	-1.5
16,334	-		LU632_RS25400	0.77	+0.9
16,343	+		LU632_RS25400	0.78	-0.3
16,344	-		LU632_RS25400	0.78	-1.8
16,373	+		LU632_RS25400	0.79	-0.4
16,373	+		LU632_RS25400	0.79	-1.8
16,374	-		LU632_RS25400	0.79	-0.1
16,374	-		LU632_RS25400	0.79	+0.0
16,374	-		LU632_RS25400	0.79	+1.0
16,374	-		LU632_RS25400	0.79	+0.6
16,374	-		LU632_RS25400	0.79	+1.2
16,374	-		LU632_RS25400	0.79	-0.5
16,374	-		LU632_RS25400	0.79	-2.1
16,374	-		LU632_RS25400	0.79	-1.0
16,374	-		LU632_RS25400	0.79	-0.1
16,375	+		LU632_RS25400	0.79	-0.2
16,375	+		LU632_RS25400	0.79	+0.2
16,375	+		LU632_RS25400	0.79	-1.1
16,375	+		LU632_RS25400	0.79	-1.1
16,375	+		LU632_RS25400	0.79	-0.5
16,375	+		LU632_RS25400	0.79	-0.3
16,375	+		LU632_RS25400	0.79	+1.1
16,376	-		LU632_RS25400	0.79	-1.3
16,376	-		LU632_RS25400	0.79	-0.9
16,376	-		LU632_RS25400	0.79	-1.3
16,376	-		LU632_RS25400	0.79	-1.5
16,376	-		LU632_RS25400	0.79	-0.2
16,376	-		LU632_RS25400	0.79	+0.9
16,376	-		LU632_RS25400	0.79	+0.8
16,376	-		LU632_RS25400	0.79	-1.1
16,376	-		LU632_RS25400	0.79	+0.3
16,376	-		LU632_RS25400	0.79	+0.5
16,376	-		LU632_RS25400	0.79	+0.9
16,376	-		LU632_RS25400	0.79	-1.1
16,379	+		LU632_RS25400	0.79	+0.7
16,391	+		LU632_RS25400	0.80	-0.0
16,392	-		LU632_RS25400	0.80	-0.6
16,410	+		LU632_RS25400	0.81	+0.1
16,411	-		LU632_RS25400	0.81	-0.3
16,411	-		LU632_RS25400	0.81	+0.5
16,411	-		LU632_RS25400	0.81	+0.1
16,417	-		LU632_RS25400	0.81	-0.3
16,419	-		LU632_RS25400	0.81	-0.6
16,420	+		LU632_RS25400	0.81	+1.7
16,420	+		LU632_RS25400	0.81	+0.4
16,421	-		LU632_RS25400	0.81	-1.1
16,421	-		LU632_RS25400	0.81	+0.4
16,421	-		LU632_RS25400	0.81	+0.5
16,421	-		LU632_RS25400	0.81	+0.7
16,421	-		LU632_RS25400	0.81	+0.7
16,514	+		LU632_RS25400	0.86	-0.6
16,515	-		LU632_RS25400	0.86	-0.3
16,515	-		LU632_RS25400	0.86	-0.3
16,516	+		LU632_RS25400	0.86	-0.2
16,516	+		LU632_RS25400	0.86	-1.5
16,516	+		LU632_RS25400	0.86	-1.5
16,516	+		LU632_RS25400	0.86	+0.3
16,516	+		LU632_RS25400	0.86	+0.7
16,522	+		LU632_RS25400	0.86	-0.1
16,576	+		LU632_RS25400	0.88	-0.3
16,576	+		LU632_RS25400	0.88	+2.1
16,576	+		LU632_RS25400	0.88	+1.4
16,576	+		LU632_RS25400	0.88	+2.8
16,576	+		LU632_RS25400	0.88	-1.7
16,576	+		LU632_RS25400	0.88	-1.1
16,577	-		LU632_RS25400	0.88	+2.5
16,595	-		LU632_RS25400	0.89	-0.6
16,596	+		LU632_RS25400	0.89	-1.2
16,596	+		LU632_RS25400	0.89	-2.4
16,596	+		LU632_RS25400	0.89	-0.3
16,596	+		LU632_RS25400	0.89	+0.1
16,596	+		LU632_RS25400	0.89	-0.4
16,596	+		LU632_RS25400	0.89	+0.5
16,597	-		LU632_RS25400	0.89	+0.0
16,597	-		LU632_RS25400	0.89	-1.5
16,610	+				+0.7
16,611	+				+3.0
16,647	+				-1.3
16,659	+				-1.1
16,660	-				-0.1
16,660	-				-1.3
16,660	-				+1.1
16,675	+				-1.9
16,675	+				-0.6
16,676	-				-1.3
16,676	-				+0.8
16,794	-				+4.0
16,824	+				+1.1
16,824	+				+1.0
17,159	+				+2.1
17,159	+				-0.9
17,159	+				+1.2
17,159	+				-0.1
17,159	+				+0.7
17,159	+				+0.8
17,159	+				+0.2
17,159	+				-1.4
17,160	-				+2.2
17,160	-				-0.5
17,160	-				+1.9
17,160	-				-1.6
17,160	-				+0.5
17,160	-				+0.9
17,160	-				+1.0
17,164	-				+1.9
17,164	-				-1.3
17,253	-		LU632_RS25410	0.31	+0.5
17,278	-		LU632_RS25410	0.40	+1.1
17,294	+		LU632_RS25410	0.45	+0.5
17,316	+		LU632_RS25410	0.53	+0.0
17,317	-		LU632_RS25410	0.53	-0.8
17,362	-		LU632_RS25410	0.69	+1.4
17,424	+				-0.9
17,425	-				+2.5
17,464	-				-0.2
17,464	-				+0.1
17,467	+				+2.3
17,467	+				+0.4
17,467	+				-1.5
17,467	+				+0.4
17,467	+				-2.5
17,467	+				+1.3
17,467	+				-0.7
17,467	+				-2.2
17,468	-				+0.8
17,468	-				+1.9
17,468	-				+0.4
17,468	-				-0.6
17,468	-				-1.1
17,468	-				+0.3
17,468	-				-0.6
17,468	-				+1.1
17,488	+				+0.8
17,493	-				+0.5
17,512	-				+0.1
17,512	-				-1.1
17,512	-				+0.1
17,606	+	excA	LU632_RS25415	0.20	+0.8
17,607	-	excA	LU632_RS25415	0.20	+0.5
17,610	+	excA	LU632_RS25415	0.21	-0.1
17,646	+	excA	LU632_RS25415	0.26	+0.4
17,647	-	excA	LU632_RS25415	0.26	-0.3
17,649	+	excA	LU632_RS25415	0.27	+0.1
17,691	-	excA	LU632_RS25415	0.33	+1.4
17,691	-	excA	LU632_RS25415	0.33	-0.2
17,698	-	excA	LU632_RS25415	0.34	-2.4
17,698	-	excA	LU632_RS25415	0.34	-1.1
17,698	-	excA	LU632_RS25415	0.34	+0.4
17,698	-	excA	LU632_RS25415	0.34	+1.5
17,698	-	excA	LU632_RS25415	0.34	+0.3
17,698	-	excA	LU632_RS25415	0.34	-0.2
17,698	-	excA	LU632_RS25415	0.34	+1.0
17,698	-	excA	LU632_RS25415	0.34	-0.9
17,699	+	excA	LU632_RS25415	0.34	-0.6
17,699	+	excA	LU632_RS25415	0.34	+0.5
17,735	+	excA	LU632_RS25415	0.39	-0.2
17,735	+	excA	LU632_RS25415	0.39	+0.2
17,804	+	excA	LU632_RS25415	0.49	-2.7
17,808	+	excA	LU632_RS25415	0.50	-0.2