Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19480

Experiment: plant=Squash; plant sample=Q5; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Squash; plant sample=Q5; plant location=P2
3,689,164	+	prlC	LU632_RS19470	0.87	-0.4
3,689,201	+	prlC	LU632_RS19470	0.89	+0.1
3,689,435	+				+1.3
3,689,436	-				-1.0
3,689,436	-				-0.3
3,689,436	-				-1.2
3,689,439	+				+1.7
3,689,440	-				-0.6
3,689,513	+				+1.2
3,689,514	-				-0.0
3,689,540	+				+0.5
3,689,550	-				-0.7
3,689,572	+				-1.5
3,689,572	+				-0.2
3,689,583	+				+0.3
3,689,598	+				-1.4
3,689,629	-				+0.7
3,689,629	-				+1.0
3,689,636	+				-0.3
3,689,806	-		LU632_RS19475	0.41	+0.7
3,689,810	+		LU632_RS19475	0.42	-1.6
3,689,810	+		LU632_RS19475	0.42	+0.1
3,689,860	-		LU632_RS19475	0.63	+2.2
3,689,908	+		LU632_RS19475	0.83	-2.0
3,689,908	+		LU632_RS19475	0.83	-0.5
3,689,945	+				-0.5
3,689,945	+				+0.5
3,689,945	+				-0.4
3,689,945	+				+1.3
3,689,946	-				+0.9
3,689,946	-				+2.0
3,689,974	-				+0.1
3,689,974	-				-2.1
3,690,055	-				+0.6
3,690,119	-				-1.5
3,690,283	+		LU632_RS19480	0.20	+2.1
3,690,329	+		LU632_RS19480	0.26	+0.4
3,690,329	+		LU632_RS19480	0.26	-0.8
3,690,434	-		LU632_RS19480	0.40	+0.6
3,690,434	-		LU632_RS19480	0.40	-0.2
3,690,478	-		LU632_RS19480	0.46	+0.5
3,690,480	+		LU632_RS19480	0.46	-1.4
3,690,480	+		LU632_RS19480	0.46	-0.6
3,690,480	+		LU632_RS19480	0.46	-0.2
3,690,480	+		LU632_RS19480	0.46	-0.4
3,690,480	+		LU632_RS19480	0.46	+0.4
3,690,481	-		LU632_RS19480	0.46	+0.5
3,690,481	-		LU632_RS19480	0.46	-0.6
3,690,481	-		LU632_RS19480	0.46	-0.1
3,690,484	+		LU632_RS19480	0.46	+0.8
3,690,484	+		LU632_RS19480	0.46	-0.5
3,690,503	+		LU632_RS19480	0.49	+0.1
3,690,504	-		LU632_RS19480	0.49	+0.0
3,690,504	-		LU632_RS19480	0.49	+0.5
3,690,504	-		LU632_RS19480	0.49	+0.9
3,690,729	+		LU632_RS19480	0.79	-0.2
3,690,852	-				+0.8
3,690,852	-				-2.2
3,691,001	-				-0.6
3,691,013	+				-0.2
3,691,013	+				-0.1
3,691,019	+				-0.2
3,691,019	+				-1.1
3,691,019	+				+0.1
3,691,020	-				-0.6
3,691,063	+				-0.3
3,691,063	+				+0.7
3,691,179	+				-1.5
3,691,208	+				-0.1
3,691,255	+				-0.7
3,691,255	+				+2.0
3,691,311	-		LU632_RS19485	0.13	-0.3
3,691,341	-		LU632_RS19485	0.17	+0.7
3,691,379	+		LU632_RS19485	0.21	-0.5
3,691,439	+		LU632_RS19485	0.28	-0.4
3,691,440	-		LU632_RS19485	0.29	-0.7
3,691,440	-		LU632_RS19485	0.29	-0.7
3,691,632	-		LU632_RS19485	0.51	+3.5
3,691,697	+		LU632_RS19485	0.59	+0.5
3,691,704	+		LU632_RS19485	0.60	+1.8
3,691,772	+		LU632_RS19485	0.68	-1.4