Strain Fitness in Erwinia amylovora T8 around OLJFJH_05315

Experiment: Matrix:KB soft agar;Phage:PBS;Temp:28;Samp:32-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05310 and OLJFJH_05315 are separated by 744 nucleotidesOLJFJH_05315 and OLJFJH_05320 overlap by 4 nucleotides OLJFJH_05310: OLJFJH_05310 - F0F1 ATP synthase subunit I, at 1,056,037 to 1,056,417 _05310 OLJFJH_05315: OLJFJH_05315 - 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG, at 1,057,162 to 1,057,788 _05315 OLJFJH_05320: OLJFJH_05320 - tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG, at 1,057,785 to 1,059,674 _05320 Position (kb) 1057 1058Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1056.163 kb on - strand, within OLJFJH_05310at 1056.466 kb on - strandat 1056.466 kb on - strandat 1056.688 kb on + strandat 1056.688 kb on + strandat 1056.859 kb on + strandat 1056.860 kb on - strandat 1056.869 kb on + strandat 1056.880 kb on - strandat 1056.880 kb on - strandat 1056.900 kb on + strandat 1056.902 kb on + strandat 1056.903 kb on - strandat 1056.986 kb on + strandat 1056.986 kb on + strandat 1057.121 kb on + strandat 1057.122 kb on - strandat 1057.151 kb on + strandat 1057.186 kb on + strandat 1057.186 kb on + strandat 1057.186 kb on + strandat 1057.288 kb on + strand, within OLJFJH_05315at 1057.297 kb on + strand, within OLJFJH_05315at 1057.298 kb on - strand, within OLJFJH_05315at 1057.298 kb on - strand, within OLJFJH_05315at 1057.350 kb on + strand, within OLJFJH_05315at 1057.417 kb on + strand, within OLJFJH_05315at 1057.465 kb on + strand, within OLJFJH_05315at 1057.483 kb on + strand, within OLJFJH_05315at 1057.484 kb on - strand, within OLJFJH_05315at 1057.484 kb on - strand, within OLJFJH_05315at 1057.484 kb on - strand, within OLJFJH_05315at 1057.636 kb on + strand, within OLJFJH_05315at 1057.684 kb on - strand, within OLJFJH_05315at 1057.709 kb on + strand, within OLJFJH_05315at 1057.761 kb on + strandat 1057.761 kb on + strandat 1057.762 kb on - strandat 1057.762 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:PBS;Temp:28;Samp:32-1
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1,056,163 - OLJFJH_05310 0.33 +0.0
1,056,466 - -0.9
1,056,466 - -2.2
1,056,688 + +0.3
1,056,688 + -0.2
1,056,859 + +1.5
1,056,860 - -0.3
1,056,869 + +1.9
1,056,880 - -0.1
1,056,880 - +0.5
1,056,900 + -0.1
1,056,902 + +0.0
1,056,903 - +0.3
1,056,986 + +0.0
1,056,986 + +0.3
1,057,121 + -0.1
1,057,122 - +0.3
1,057,151 + +1.3
1,057,186 + +0.8
1,057,186 + -0.1
1,057,186 + +0.4
1,057,288 + OLJFJH_05315 0.20 +0.4
1,057,297 + OLJFJH_05315 0.22 +0.7
1,057,298 - OLJFJH_05315 0.22 +1.1
1,057,298 - OLJFJH_05315 0.22 +0.1
1,057,350 + OLJFJH_05315 0.30 -0.2
1,057,417 + OLJFJH_05315 0.41 +0.5
1,057,465 + OLJFJH_05315 0.48 +0.8
1,057,483 + OLJFJH_05315 0.51 +0.5
1,057,484 - OLJFJH_05315 0.51 +5.0
1,057,484 - OLJFJH_05315 0.51 +0.4
1,057,484 - OLJFJH_05315 0.51 -0.1
1,057,636 + OLJFJH_05315 0.76 +0.8
1,057,684 - OLJFJH_05315 0.83 +0.6
1,057,709 + OLJFJH_05315 0.87 +0.6
1,057,761 + +1.2
1,057,761 + +0.4
1,057,762 - -0.4
1,057,762 - +0.5

Or see this region's nucleotide sequence