Strain Fitness in Erwinia amylovora T8 around OLJFJH_17845

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_17830 and OLJFJH_17835 are separated by 170 nucleotidesOLJFJH_17835 and OLJFJH_17840 are separated by 73 nucleotidesOLJFJH_17840 and OLJFJH_17845 are separated by 7 nucleotidesOLJFJH_17845 and OLJFJH_17850 are separated by 133 nucleotides OLJFJH_17830: OLJFJH_17830 - prephenate dehydrogenase, at 3,748,004 to 3,748,540 _17830 OLJFJH_17835: OLJFJH_17835 - hypothetical protein, at 3,748,711 to 3,748,905 _17835 OLJFJH_17840: OLJFJH_17840 - pleiotropic regulatory protein RsmS, at 3,748,979 to 3,749,128 _17840 OLJFJH_17845: OLJFJH_17845 - multidrug efflux transporter transcriptional repressor AcrR, at 3,749,136 to 3,749,774 _17845 OLJFJH_17850: OLJFJH_17850 - efflux transporter periplasmic adaptor subunit, at 3,749,908 to 3,751,101 _17850 Position (kb) 3749 3750Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3748.161 kb on + strand, within OLJFJH_17830at 3748.440 kb on + strand, within OLJFJH_17830at 3748.440 kb on + strand, within OLJFJH_17830at 3748.441 kb on - strand, within OLJFJH_17830at 3748.441 kb on - strand, within OLJFJH_17830at 3748.552 kb on - strandat 3748.592 kb on + strandat 3748.638 kb on + strandat 3748.638 kb on + strandat 3748.639 kb on - strandat 3748.667 kb on + strandat 3748.668 kb on - strandat 3748.668 kb on - strandat 3748.668 kb on - strandat 3748.708 kb on - strandat 3748.708 kb on - strandat 3748.708 kb on - strandat 3748.710 kb on + strandat 3748.722 kb on + strandat 3748.808 kb on + strand, within OLJFJH_17835at 3748.842 kb on + strand, within OLJFJH_17835at 3748.842 kb on + strand, within OLJFJH_17835at 3748.843 kb on - strand, within OLJFJH_17835at 3748.848 kb on + strand, within OLJFJH_17835at 3748.849 kb on - strand, within OLJFJH_17835at 3748.852 kb on + strand, within OLJFJH_17835at 3748.853 kb on - strand, within OLJFJH_17835at 3748.853 kb on - strand, within OLJFJH_17835at 3748.939 kb on - strandat 3748.958 kb on + strandat 3748.958 kb on + strandat 3748.958 kb on + strandat 3748.958 kb on - strandat 3748.959 kb on - strandat 3748.959 kb on - strandat 3748.959 kb on - strandat 3748.978 kb on + strandat 3748.978 kb on + strandat 3748.979 kb on - strandat 3748.979 kb on - strandat 3749.029 kb on + strand, within OLJFJH_17840at 3749.035 kb on - strand, within OLJFJH_17840at 3749.035 kb on - strand, within OLJFJH_17840at 3749.084 kb on - strand, within OLJFJH_17840at 3749.088 kb on + strand, within OLJFJH_17840at 3749.088 kb on + strand, within OLJFJH_17840at 3749.089 kb on - strand, within OLJFJH_17840at 3749.089 kb on - strand, within OLJFJH_17840at 3749.089 kb on - strand, within OLJFJH_17840at 3749.089 kb on - strand, within OLJFJH_17840at 3749.164 kb on + strandat 3749.164 kb on + strandat 3749.165 kb on - strandat 3749.181 kb on + strandat 3749.181 kb on + strandat 3749.181 kb on + strandat 3749.181 kb on + strandat 3749.234 kb on + strand, within OLJFJH_17845at 3749.238 kb on + strand, within OLJFJH_17845at 3749.266 kb on + strand, within OLJFJH_17845at 3749.267 kb on - strand, within OLJFJH_17845at 3749.330 kb on + strand, within OLJFJH_17845at 3749.331 kb on - strand, within OLJFJH_17845at 3749.352 kb on + strand, within OLJFJH_17845at 3749.375 kb on - strand, within OLJFJH_17845at 3749.434 kb on + strand, within OLJFJH_17845at 3749.435 kb on - strand, within OLJFJH_17845at 3749.491 kb on + strand, within OLJFJH_17845at 3749.491 kb on + strand, within OLJFJH_17845at 3749.492 kb on - strand, within OLJFJH_17845at 3749.492 kb on - strand, within OLJFJH_17845at 3749.492 kb on - strand, within OLJFJH_17845at 3749.492 kb on - strand, within OLJFJH_17845at 3749.492 kb on - strand, within OLJFJH_17845at 3749.630 kb on - strand, within OLJFJH_17845at 3749.681 kb on + strand, within OLJFJH_17845at 3749.681 kb on + strand, within OLJFJH_17845at 3749.682 kb on - strand, within OLJFJH_17845at 3749.682 kb on - strand, within OLJFJH_17845at 3749.682 kb on - strand, within OLJFJH_17845at 3749.684 kb on + strand, within OLJFJH_17845at 3749.685 kb on - strand, within OLJFJH_17845at 3749.724 kb on + strandat 3749.724 kb on + strandat 3749.724 kb on + strandat 3749.724 kb on + strandat 3749.725 kb on - strandat 3749.725 kb on - strandat 3749.725 kb on - strandat 3749.727 kb on - strandat 3749.803 kb on + strandat 3749.807 kb on + strandat 3749.808 kb on - strandat 3749.828 kb on + strandat 3749.828 kb on + strandat 3749.830 kb on + strandat 3750.038 kb on + strand, within OLJFJH_17850at 3750.061 kb on - strand, within OLJFJH_17850at 3750.136 kb on - strand, within OLJFJH_17850at 3750.188 kb on + strand, within OLJFJH_17850at 3750.189 kb on - strand, within OLJFJH_17850at 3750.211 kb on + strand, within OLJFJH_17850at 3750.211 kb on + strand, within OLJFJH_17850at 3750.212 kb on - strand, within OLJFJH_17850at 3750.212 kb on - strand, within OLJFJH_17850at 3750.212 kb on - strand, within OLJFJH_17850at 3750.280 kb on - strand, within OLJFJH_17850at 3750.287 kb on + strand, within OLJFJH_17850at 3750.315 kb on + strand, within OLJFJH_17850at 3750.315 kb on + strand, within OLJFJH_17850at 3750.316 kb on - strand, within OLJFJH_17850at 3750.319 kb on + strand, within OLJFJH_17850at 3750.319 kb on + strand, within OLJFJH_17850at 3750.319 kb on + strand, within OLJFJH_17850at 3750.319 kb on + strand, within OLJFJH_17850at 3750.319 kb on + strand, within OLJFJH_17850at 3750.320 kb on - strand, within OLJFJH_17850at 3750.320 kb on - strand, within OLJFJH_17850at 3750.320 kb on - strand, within OLJFJH_17850at 3750.320 kb on - strand, within OLJFJH_17850at 3750.321 kb on + strand, within OLJFJH_17850at 3750.417 kb on + strand, within OLJFJH_17850at 3750.465 kb on + strand, within OLJFJH_17850at 3750.465 kb on + strand, within OLJFJH_17850at 3750.511 kb on - strand, within OLJFJH_17850at 3750.528 kb on - strand, within OLJFJH_17850at 3750.547 kb on + strand, within OLJFJH_17850at 3750.547 kb on + strand, within OLJFJH_17850at 3750.547 kb on + strand, within OLJFJH_17850at 3750.548 kb on - strand, within OLJFJH_17850at 3750.548 kb on - strand, within OLJFJH_17850at 3750.557 kb on + strand, within OLJFJH_17850at 3750.557 kb on + strand, within OLJFJH_17850at 3750.558 kb on - strand, within OLJFJH_17850at 3750.580 kb on - strand, within OLJFJH_17850at 3750.671 kb on - strand, within OLJFJH_17850at 3750.686 kb on + strand, within OLJFJH_17850at 3750.690 kb on - strand, within OLJFJH_17850at 3750.729 kb on + strand, within OLJFJH_17850at 3750.729 kb on + strand, within OLJFJH_17850at 3750.729 kb on + strand, within OLJFJH_17850at 3750.729 kb on + strand, within OLJFJH_17850at 3750.729 kb on + strand, within OLJFJH_17850at 3750.730 kb on - strand, within OLJFJH_17850

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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3,748,161 + OLJFJH_17830 0.29 +3.1
3,748,440 + OLJFJH_17830 0.81 +0.3
3,748,440 + OLJFJH_17830 0.81 +0.5
3,748,441 - OLJFJH_17830 0.81 +0.5
3,748,441 - OLJFJH_17830 0.81 +1.0
3,748,552 - +0.4
3,748,592 + -0.3
3,748,638 + -0.6
3,748,638 + -0.1
3,748,639 - +0.5
3,748,667 + +0.5
3,748,668 - -0.4
3,748,668 - -0.5
3,748,668 - +0.9
3,748,708 - +0.3
3,748,708 - +1.6
3,748,708 - -0.0
3,748,710 + -0.1
3,748,722 + +0.1
3,748,808 + OLJFJH_17835 0.50 +0.3
3,748,842 + OLJFJH_17835 0.67 +0.1
3,748,842 + OLJFJH_17835 0.67 +0.3
3,748,843 - OLJFJH_17835 0.68 +0.3
3,748,848 + OLJFJH_17835 0.70 -0.1
3,748,849 - OLJFJH_17835 0.71 +0.2
3,748,852 + OLJFJH_17835 0.72 -0.3
3,748,853 - OLJFJH_17835 0.73 -0.2
3,748,853 - OLJFJH_17835 0.73 -0.9
3,748,939 - +0.6
3,748,958 + +0.8
3,748,958 + +0.8
3,748,958 + +0.2
3,748,958 - -0.1
3,748,959 - +0.5
3,748,959 - -1.2
3,748,959 - -0.5
3,748,978 + -0.1
3,748,978 + +0.2
3,748,979 - -0.1
3,748,979 - +0.0
3,749,029 + OLJFJH_17840 0.33 +0.4
3,749,035 - OLJFJH_17840 0.37 -0.1
3,749,035 - OLJFJH_17840 0.37 -0.1
3,749,084 - OLJFJH_17840 0.70 -1.0
3,749,088 + OLJFJH_17840 0.73 -1.8
3,749,088 + OLJFJH_17840 0.73 +0.6
3,749,089 - OLJFJH_17840 0.73 -0.5
3,749,089 - OLJFJH_17840 0.73 -0.1
3,749,089 - OLJFJH_17840 0.73 +0.1
3,749,089 - OLJFJH_17840 0.73 -0.8
3,749,164 + -1.3
3,749,164 + -1.4
3,749,165 - -1.6
3,749,181 + -1.2
3,749,181 + -2.3
3,749,181 + -1.2
3,749,181 + -0.1
3,749,234 + OLJFJH_17845 0.15 -0.4
3,749,238 + OLJFJH_17845 0.16 -1.9
3,749,266 + OLJFJH_17845 0.20 -0.9
3,749,267 - OLJFJH_17845 0.21 -1.6
3,749,330 + OLJFJH_17845 0.30 -1.4
3,749,331 - OLJFJH_17845 0.31 -1.2
3,749,352 + OLJFJH_17845 0.34 -1.5
3,749,375 - OLJFJH_17845 0.37 -1.2
3,749,434 + OLJFJH_17845 0.47 -1.2
3,749,435 - OLJFJH_17845 0.47 -2.3
3,749,491 + OLJFJH_17845 0.56 -2.6
3,749,491 + OLJFJH_17845 0.56 -1.2
3,749,492 - OLJFJH_17845 0.56 -0.6
3,749,492 - OLJFJH_17845 0.56 -0.9
3,749,492 - OLJFJH_17845 0.56 -1.3
3,749,492 - OLJFJH_17845 0.56 -1.0
3,749,492 - OLJFJH_17845 0.56 -2.5
3,749,630 - OLJFJH_17845 0.77 -1.1
3,749,681 + OLJFJH_17845 0.85 -1.5
3,749,681 + OLJFJH_17845 0.85 -0.7
3,749,682 - OLJFJH_17845 0.85 -1.7
3,749,682 - OLJFJH_17845 0.85 -0.8
3,749,682 - OLJFJH_17845 0.85 -2.3
3,749,684 + OLJFJH_17845 0.86 -1.6
3,749,685 - OLJFJH_17845 0.86 -1.8
3,749,724 + -0.7
3,749,724 + -0.4
3,749,724 + -0.5
3,749,724 + -0.7
3,749,725 - -2.3
3,749,725 - -2.6
3,749,725 - -1.3
3,749,727 - -0.1
3,749,803 + -1.5
3,749,807 + -0.3
3,749,808 - +1.5
3,749,828 + -0.5
3,749,828 + -1.2
3,749,830 + -0.5
3,750,038 + OLJFJH_17850 0.11 +0.3
3,750,061 - OLJFJH_17850 0.13 +1.2
3,750,136 - OLJFJH_17850 0.19 -0.7
3,750,188 + OLJFJH_17850 0.23 +0.1
3,750,189 - OLJFJH_17850 0.24 +1.1
3,750,211 + OLJFJH_17850 0.25 +0.4
3,750,211 + OLJFJH_17850 0.25 +0.8
3,750,212 - OLJFJH_17850 0.25 +0.3
3,750,212 - OLJFJH_17850 0.25 +0.2
3,750,212 - OLJFJH_17850 0.25 -0.7
3,750,280 - OLJFJH_17850 0.31 +1.1
3,750,287 + OLJFJH_17850 0.32 -1.1
3,750,315 + OLJFJH_17850 0.34 +1.9
3,750,315 + OLJFJH_17850 0.34 -0.0
3,750,316 - OLJFJH_17850 0.34 -0.0
3,750,319 + OLJFJH_17850 0.34 +0.1
3,750,319 + OLJFJH_17850 0.34 +0.8
3,750,319 + OLJFJH_17850 0.34 +0.5
3,750,319 + OLJFJH_17850 0.34 -0.3
3,750,319 + OLJFJH_17850 0.34 +0.8
3,750,320 - OLJFJH_17850 0.35 -0.3
3,750,320 - OLJFJH_17850 0.35 -0.5
3,750,320 - OLJFJH_17850 0.35 -0.9
3,750,320 - OLJFJH_17850 0.35 -0.7
3,750,321 + OLJFJH_17850 0.35 -0.1
3,750,417 + OLJFJH_17850 0.43 +1.3
3,750,465 + OLJFJH_17850 0.47 -0.0
3,750,465 + OLJFJH_17850 0.47 +1.3
3,750,511 - OLJFJH_17850 0.51 +0.4
3,750,528 - OLJFJH_17850 0.52 -0.2
3,750,547 + OLJFJH_17850 0.54 +1.1
3,750,547 + OLJFJH_17850 0.54 -0.7
3,750,547 + OLJFJH_17850 0.54 +0.5
3,750,548 - OLJFJH_17850 0.54 -0.8
3,750,548 - OLJFJH_17850 0.54 +0.5
3,750,557 + OLJFJH_17850 0.54 +1.3
3,750,557 + OLJFJH_17850 0.54 -0.1
3,750,558 - OLJFJH_17850 0.54 +0.4
3,750,580 - OLJFJH_17850 0.56 +1.9
3,750,671 - OLJFJH_17850 0.64 -0.6
3,750,686 + OLJFJH_17850 0.65 -0.5
3,750,690 - OLJFJH_17850 0.65 +0.7
3,750,729 + OLJFJH_17850 0.69 -0.7
3,750,729 + OLJFJH_17850 0.69 +0.9
3,750,729 + OLJFJH_17850 0.69 +0.6
3,750,729 + OLJFJH_17850 0.69 -2.6
3,750,729 + OLJFJH_17850 0.69 +0.2
3,750,730 - OLJFJH_17850 0.69 +1.6

Or see this region's nucleotide sequence