Strain Fitness in Erwinia amylovora T8 around OLJFJH_07265

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_07250 and OLJFJH_07255 are separated by 107 nucleotidesOLJFJH_07255 and OLJFJH_07265 are separated by 303 nucleotidesOLJFJH_07265 and OLJFJH_07270 are separated by 132 nucleotides OLJFJH_07250: OLJFJH_07250 - tRNA pseudouridine(55) synthase TruB, at 1,475,811 to 1,476,755 _07250 OLJFJH_07255: OLJFJH_07255 - 30S ribosomal protein S15, at 1,476,863 to 1,477,132 _07255 OLJFJH_07265: OLJFJH_07265 - polyribonucleotide nucleotidyltransferase, at 1,477,436 to 1,479,568 _07265 OLJFJH_07270: OLJFJH_07270 - lipoprotein NlpI, at 1,479,701 to 1,480,585 _07270 Position (kb) 1477 1478 1479 1480Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1476.650 kb on - strand, within OLJFJH_07250at 1476.753 kb on + strandat 1476.757 kb on + strandat 1476.757 kb on + strandat 1476.757 kb on + strandat 1476.757 kb on + strandat 1476.757 kb on + strandat 1476.758 kb on - strandat 1476.758 kb on - strandat 1476.758 kb on - strandat 1476.758 kb on - strandat 1477.095 kb on - strand, within OLJFJH_07255at 1477.096 kb on + strand, within OLJFJH_07255at 1477.131 kb on - strandat 1477.269 kb on + strandat 1477.270 kb on - strandat 1477.274 kb on + strandat 1477.275 kb on - strandat 1477.275 kb on - strandat 1477.569 kb on + strandat 1477.569 kb on + strandat 1477.622 kb on + strandat 1477.622 kb on + strandat 1477.634 kb on - strandat 1477.917 kb on - strand, within OLJFJH_07265at 1478.074 kb on + strand, within OLJFJH_07265at 1478.170 kb on + strand, within OLJFJH_07265at 1478.421 kb on + strand, within OLJFJH_07265at 1478.421 kb on + strand, within OLJFJH_07265at 1478.422 kb on - strand, within OLJFJH_07265at 1478.752 kb on + strand, within OLJFJH_07265at 1478.752 kb on + strand, within OLJFJH_07265at 1479.308 kb on + strand, within OLJFJH_07265at 1479.382 kb on - strandat 1479.385 kb on + strandat 1479.385 kb on + strandat 1479.385 kb on + strandat 1479.385 kb on + strandat 1479.386 kb on - strandat 1479.462 kb on + strandat 1479.671 kb on - strandat 1479.698 kb on + strandat 1479.698 kb on + strandat 1479.698 kb on + strandat 1479.699 kb on - strandat 1479.758 kb on - strandat 1479.775 kb on + strandat 1479.895 kb on - strand, within OLJFJH_07270at 1479.896 kb on + strand, within OLJFJH_07270at 1479.914 kb on + strand, within OLJFJH_07270at 1479.915 kb on - strand, within OLJFJH_07270at 1479.993 kb on + strand, within OLJFJH_07270at 1480.011 kb on + strand, within OLJFJH_07270at 1480.013 kb on + strand, within OLJFJH_07270at 1480.091 kb on + strand, within OLJFJH_07270at 1480.138 kb on + strand, within OLJFJH_07270at 1480.211 kb on + strand, within OLJFJH_07270at 1480.273 kb on + strand, within OLJFJH_07270at 1480.273 kb on + strand, within OLJFJH_07270at 1480.415 kb on + strand, within OLJFJH_07270at 1480.419 kb on + strand, within OLJFJH_07270at 1480.419 kb on + strand, within OLJFJH_07270at 1480.423 kb on + strand, within OLJFJH_07270at 1480.427 kb on + strand, within OLJFJH_07270at 1480.427 kb on + strand, within OLJFJH_07270at 1480.434 kb on + strand, within OLJFJH_07270at 1480.435 kb on - strand, within OLJFJH_07270

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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1,476,650 - OLJFJH_07250 0.89 +0.8
1,476,753 + +0.1
1,476,757 + +0.8
1,476,757 + -2.1
1,476,757 + +0.0
1,476,757 + +0.3
1,476,757 + +0.2
1,476,758 - -0.9
1,476,758 - +0.9
1,476,758 - +0.4
1,476,758 - +0.9
1,477,095 - OLJFJH_07255 0.86 +0.9
1,477,096 + OLJFJH_07255 0.86 -1.7
1,477,131 - -0.7
1,477,269 + -1.4
1,477,270 - -0.5
1,477,274 + -0.6
1,477,275 - -0.9
1,477,275 - -1.2
1,477,569 + +0.4
1,477,569 + -0.5
1,477,622 + -2.9
1,477,622 + -0.7
1,477,634 - -1.3
1,477,917 - OLJFJH_07265 0.23 -0.9
1,478,074 + OLJFJH_07265 0.30 -0.5
1,478,170 + OLJFJH_07265 0.34 -1.8
1,478,421 + OLJFJH_07265 0.46 -2.4
1,478,421 + OLJFJH_07265 0.46 -0.7
1,478,422 - OLJFJH_07265 0.46 -0.1
1,478,752 + OLJFJH_07265 0.62 -0.7
1,478,752 + OLJFJH_07265 0.62 -1.7
1,479,308 + OLJFJH_07265 0.88 -0.9
1,479,382 - +0.3
1,479,385 + -0.8
1,479,385 + -1.3
1,479,385 + -1.3
1,479,385 + -1.1
1,479,386 - -1.1
1,479,462 + -1.3
1,479,671 - -0.3
1,479,698 + -1.8
1,479,698 + -0.5
1,479,698 + -0.5
1,479,699 - -2.1
1,479,758 - +0.9
1,479,775 + +0.9
1,479,895 - OLJFJH_07270 0.22 -0.1
1,479,896 + OLJFJH_07270 0.22 -1.1
1,479,914 + OLJFJH_07270 0.24 -1.3
1,479,915 - OLJFJH_07270 0.24 -0.9
1,479,993 + OLJFJH_07270 0.33 -0.6
1,480,011 + OLJFJH_07270 0.35 +1.1
1,480,013 + OLJFJH_07270 0.35 -0.1
1,480,091 + OLJFJH_07270 0.44 -1.3
1,480,138 + OLJFJH_07270 0.49 -0.1
1,480,211 + OLJFJH_07270 0.58 -0.5
1,480,273 + OLJFJH_07270 0.65 -0.5
1,480,273 + OLJFJH_07270 0.65 +1.9
1,480,415 + OLJFJH_07270 0.81 -0.1
1,480,419 + OLJFJH_07270 0.81 -0.7
1,480,419 + OLJFJH_07270 0.81 -0.7
1,480,423 + OLJFJH_07270 0.82 -2.5
1,480,427 + OLJFJH_07270 0.82 -1.2
1,480,427 + OLJFJH_07270 0.82 -0.6
1,480,434 + OLJFJH_07270 0.83 -2.4
1,480,435 - OLJFJH_07270 0.83 -0.1

Or see this region's nucleotide sequence