Strain Fitness in Erwinia amylovora T8 around OLJFJH_07110

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOLJFJH_07105 and OLJFJH_07110 are separated by 7 nucleotidesOLJFJH_07110 and OLJFJH_07115 are separated by 4 nucleotidesOLJFJH_07115 and OLJFJH_07120 are separated by 11 nucleotides OLJFJH_07105: OLJFJH_07105 - phospholipid ABC transporter ATP-binding protein MlaF, at 1,450,372 to 1,451,184 _07105 OLJFJH_07110: OLJFJH_07110 - lipid asymmetry maintenance ABC transporter permease subunit MlaE, at 1,451,192 to 1,451,974 _07110 OLJFJH_07115: OLJFJH_07115 - outer membrane lipid asymmetry maintenance protein MlaD, at 1,451,979 to 1,452,527 _07115 OLJFJH_07120: OLJFJH_07120 - phospholipid-binding protein MlaC, at 1,452,539 to 1,453,174 _07120 Position (kb) 1451 1452Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1450.198 kb on - strandat 1450.248 kb on + strandat 1450.265 kb on + strandat 1450.265 kb on + strandat 1450.270 kb on + strandat 1450.270 kb on + strandat 1450.271 kb on - strandat 1450.278 kb on - strandat 1450.316 kb on + strandat 1450.316 kb on + strandat 1450.316 kb on + strandat 1450.319 kb on + strandat 1450.319 kb on + strandat 1450.320 kb on - strandat 1450.320 kb on - strandat 1450.320 kb on - strandat 1450.368 kb on - strandat 1450.372 kb on - strandat 1450.485 kb on + strand, within OLJFJH_07105at 1450.486 kb on - strand, within OLJFJH_07105at 1450.565 kb on + strand, within OLJFJH_07105at 1450.612 kb on + strand, within OLJFJH_07105at 1450.676 kb on + strand, within OLJFJH_07105at 1450.676 kb on + strand, within OLJFJH_07105at 1450.869 kb on + strand, within OLJFJH_07105at 1450.902 kb on + strand, within OLJFJH_07105at 1450.902 kb on + strand, within OLJFJH_07105at 1450.916 kb on + strand, within OLJFJH_07105at 1450.916 kb on + strand, within OLJFJH_07105at 1450.917 kb on - strand, within OLJFJH_07105at 1450.917 kb on - strand, within OLJFJH_07105at 1451.017 kb on + strand, within OLJFJH_07105at 1451.017 kb on + strand, within OLJFJH_07105at 1451.017 kb on + strand, within OLJFJH_07105at 1451.018 kb on - strand, within OLJFJH_07105at 1451.019 kb on + strand, within OLJFJH_07105at 1451.019 kb on + strand, within OLJFJH_07105at 1451.019 kb on + strand, within OLJFJH_07105at 1451.019 kb on + strand, within OLJFJH_07105at 1451.020 kb on - strand, within OLJFJH_07105at 1451.020 kb on - strand, within OLJFJH_07105at 1451.022 kb on + strand, within OLJFJH_07105at 1451.022 kb on + strand, within OLJFJH_07105at 1451.022 kb on + strand, within OLJFJH_07105at 1451.023 kb on - strand, within OLJFJH_07105at 1451.110 kb on - strandat 1451.110 kb on - strandat 1451.153 kb on - strandat 1451.199 kb on + strandat 1451.199 kb on + strandat 1451.200 kb on - strandat 1451.218 kb on - strandat 1451.336 kb on + strand, within OLJFJH_07110at 1451.337 kb on - strand, within OLJFJH_07110at 1451.337 kb on - strand, within OLJFJH_07110at 1451.337 kb on - strand, within OLJFJH_07110at 1451.415 kb on - strand, within OLJFJH_07110at 1451.648 kb on - strand, within OLJFJH_07110at 1451.785 kb on + strand, within OLJFJH_07110at 1451.785 kb on + strand, within OLJFJH_07110at 1451.881 kb on + strand, within OLJFJH_07110at 1451.882 kb on - strand, within OLJFJH_07110at 1451.882 kb on - strand, within OLJFJH_07110at 1451.882 kb on - strand, within OLJFJH_07110at 1451.883 kb on + strand, within OLJFJH_07110at 1451.883 kb on + strand, within OLJFJH_07110at 1451.884 kb on - strand, within OLJFJH_07110at 1451.907 kb on + strandat 1451.907 kb on + strandat 1451.908 kb on - strandat 1451.910 kb on + strandat 1451.910 kb on + strandat 1451.910 kb on + strandat 1451.910 kb on + strandat 1451.911 kb on - strandat 1451.911 kb on - strandat 1451.911 kb on - strandat 1451.911 kb on - strandat 1451.911 kb on - strandat 1451.929 kb on - strandat 1451.950 kb on + strandat 1451.951 kb on - strandat 1451.972 kb on + strandat 1451.973 kb on - strandat 1452.041 kb on + strand, within OLJFJH_07115at 1452.105 kb on + strand, within OLJFJH_07115at 1452.189 kb on - strand, within OLJFJH_07115at 1452.189 kb on - strand, within OLJFJH_07115at 1452.247 kb on - strand, within OLJFJH_07115at 1452.248 kb on + strand, within OLJFJH_07115at 1452.248 kb on + strand, within OLJFJH_07115at 1452.248 kb on + strand, within OLJFJH_07115at 1452.248 kb on + strand, within OLJFJH_07115at 1452.249 kb on - strand, within OLJFJH_07115at 1452.249 kb on - strand, within OLJFJH_07115at 1452.249 kb on - strand, within OLJFJH_07115at 1452.249 kb on - strand, within OLJFJH_07115at 1452.249 kb on - strand, within OLJFJH_07115at 1452.310 kb on - strand, within OLJFJH_07115at 1452.537 kb on + strandat 1452.537 kb on + strandat 1452.543 kb on + strandat 1452.544 kb on - strandat 1452.618 kb on + strand, within OLJFJH_07120at 1452.620 kb on + strand, within OLJFJH_07120at 1452.622 kb on + strand, within OLJFJH_07120at 1452.622 kb on + strand, within OLJFJH_07120at 1452.622 kb on + strand, within OLJFJH_07120at 1452.622 kb on + strand, within OLJFJH_07120at 1452.623 kb on - strand, within OLJFJH_07120at 1452.623 kb on - strand, within OLJFJH_07120at 1452.701 kb on + strand, within OLJFJH_07120at 1452.701 kb on + strand, within OLJFJH_07120at 1452.702 kb on - strand, within OLJFJH_07120at 1452.702 kb on - strand, within OLJFJH_07120at 1452.718 kb on - strand, within OLJFJH_07120at 1452.718 kb on - strand, within OLJFJH_07120at 1452.729 kb on + strand, within OLJFJH_07120at 1452.730 kb on - strand, within OLJFJH_07120at 1452.730 kb on - strand, within OLJFJH_07120at 1452.730 kb on - strand, within OLJFJH_07120at 1452.737 kb on + strand, within OLJFJH_07120at 1452.737 kb on + strand, within OLJFJH_07120at 1452.752 kb on + strand, within OLJFJH_07120at 1452.753 kb on - strand, within OLJFJH_07120at 1452.753 kb on - strand, within OLJFJH_07120at 1452.765 kb on + strand, within OLJFJH_07120at 1452.766 kb on - strand, within OLJFJH_07120at 1452.779 kb on + strand, within OLJFJH_07120at 1452.782 kb on + strand, within OLJFJH_07120at 1452.783 kb on - strand, within OLJFJH_07120at 1452.783 kb on - strand, within OLJFJH_07120at 1452.783 kb on - strand, within OLJFJH_07120at 1452.783 kb on - strand, within OLJFJH_07120at 1452.872 kb on + strand, within OLJFJH_07120at 1452.872 kb on + strand, within OLJFJH_07120at 1452.872 kb on + strand, within OLJFJH_07120at 1452.872 kb on + strand, within OLJFJH_07120at 1452.872 kb on + strand, within OLJFJH_07120at 1452.873 kb on - strand, within OLJFJH_07120at 1452.873 kb on - strand, within OLJFJH_07120at 1452.873 kb on - strand, within OLJFJH_07120at 1452.873 kb on - strand, within OLJFJH_07120at 1452.873 kb on - strand, within OLJFJH_07120at 1452.873 kb on - strand, within OLJFJH_07120at 1452.925 kb on + strand, within OLJFJH_07120at 1452.926 kb on - strand, within OLJFJH_07120at 1452.926 kb on - strand, within OLJFJH_07120

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
remove
1,450,198 - +0.5
1,450,248 + -1.5
1,450,265 + -0.3
1,450,265 + -0.3
1,450,270 + +0.3
1,450,270 + -0.5
1,450,271 - +0.6
1,450,278 - -1.3
1,450,316 + +0.1
1,450,316 + +0.5
1,450,316 + -0.4
1,450,319 + -1.5
1,450,319 + +0.6
1,450,320 - -0.7
1,450,320 - -0.3
1,450,320 - +0.1
1,450,368 - -1.3
1,450,372 - -1.9
1,450,485 + OLJFJH_07105 0.14 -1.7
1,450,486 - OLJFJH_07105 0.14 +0.2
1,450,565 + OLJFJH_07105 0.24 -2.5
1,450,612 + OLJFJH_07105 0.30 +0.3
1,450,676 + OLJFJH_07105 0.37 -1.1
1,450,676 + OLJFJH_07105 0.37 -1.4
1,450,869 + OLJFJH_07105 0.61 -1.0
1,450,902 + OLJFJH_07105 0.65 -0.1
1,450,902 + OLJFJH_07105 0.65 -1.2
1,450,916 + OLJFJH_07105 0.67 -1.4
1,450,916 + OLJFJH_07105 0.67 -1.0
1,450,917 - OLJFJH_07105 0.67 -0.1
1,450,917 - OLJFJH_07105 0.67 -0.6
1,451,017 + OLJFJH_07105 0.79 -1.6
1,451,017 + OLJFJH_07105 0.79 -1.2
1,451,017 + OLJFJH_07105 0.79 -1.1
1,451,018 - OLJFJH_07105 0.79 -0.5
1,451,019 + OLJFJH_07105 0.80 -1.2
1,451,019 + OLJFJH_07105 0.80 -1.8
1,451,019 + OLJFJH_07105 0.80 -1.1
1,451,019 + OLJFJH_07105 0.80 -0.8
1,451,020 - OLJFJH_07105 0.80 -1.6
1,451,020 - OLJFJH_07105 0.80 -1.5
1,451,022 + OLJFJH_07105 0.80 -2.0
1,451,022 + OLJFJH_07105 0.80 -1.5
1,451,022 + OLJFJH_07105 0.80 -1.5
1,451,023 - OLJFJH_07105 0.80 -1.9
1,451,110 - -1.1
1,451,110 - -0.9
1,451,153 - -1.5
1,451,199 + -3.0
1,451,199 + -2.4
1,451,200 - -0.7
1,451,218 - -1.4
1,451,336 + OLJFJH_07110 0.18 +0.9
1,451,337 - OLJFJH_07110 0.19 -2.6
1,451,337 - OLJFJH_07110 0.19 -2.0
1,451,337 - OLJFJH_07110 0.19 -1.9
1,451,415 - OLJFJH_07110 0.28 -1.1
1,451,648 - OLJFJH_07110 0.58 -0.7
1,451,785 + OLJFJH_07110 0.76 -2.8
1,451,785 + OLJFJH_07110 0.76 -2.9
1,451,881 + OLJFJH_07110 0.88 -4.8
1,451,882 - OLJFJH_07110 0.88 -2.9
1,451,882 - OLJFJH_07110 0.88 -1.4
1,451,882 - OLJFJH_07110 0.88 -0.9
1,451,883 + OLJFJH_07110 0.88 -3.3
1,451,883 + OLJFJH_07110 0.88 -4.3
1,451,884 - OLJFJH_07110 0.88 -0.7
1,451,907 + -1.6
1,451,907 + -3.4
1,451,908 - -1.7
1,451,910 + -5.3
1,451,910 + -3.3
1,451,910 + -3.8
1,451,910 + -0.7
1,451,911 - -1.7
1,451,911 - -2.2
1,451,911 - -0.4
1,451,911 - -0.5
1,451,911 - -2.8
1,451,929 - -0.7
1,451,950 + -2.5
1,451,951 - +1.4
1,451,972 + -0.6
1,451,973 - -0.9
1,452,041 + OLJFJH_07115 0.11 -1.6
1,452,105 + OLJFJH_07115 0.23 -0.4
1,452,189 - OLJFJH_07115 0.38 -1.0
1,452,189 - OLJFJH_07115 0.38 -0.4
1,452,247 - OLJFJH_07115 0.49 -0.3
1,452,248 + OLJFJH_07115 0.49 +0.5
1,452,248 + OLJFJH_07115 0.49 -1.1
1,452,248 + OLJFJH_07115 0.49 -1.8
1,452,248 + OLJFJH_07115 0.49 +0.9
1,452,249 - OLJFJH_07115 0.49 -0.5
1,452,249 - OLJFJH_07115 0.49 -2.0
1,452,249 - OLJFJH_07115 0.49 -0.9
1,452,249 - OLJFJH_07115 0.49 -1.3
1,452,249 - OLJFJH_07115 0.49 -1.9
1,452,310 - OLJFJH_07115 0.60 -2.1
1,452,537 + -0.7
1,452,537 + -0.7
1,452,543 + -0.8
1,452,544 - +0.8
1,452,618 + OLJFJH_07120 0.12 -0.3
1,452,620 + OLJFJH_07120 0.13 -1.6
1,452,622 + OLJFJH_07120 0.13 -0.0
1,452,622 + OLJFJH_07120 0.13 -1.5
1,452,622 + OLJFJH_07120 0.13 -0.2
1,452,622 + OLJFJH_07120 0.13 -0.9
1,452,623 - OLJFJH_07120 0.13 -0.4
1,452,623 - OLJFJH_07120 0.13 +0.4
1,452,701 + OLJFJH_07120 0.25 -1.6
1,452,701 + OLJFJH_07120 0.25 -1.4
1,452,702 - OLJFJH_07120 0.26 -0.6
1,452,702 - OLJFJH_07120 0.26 -1.3
1,452,718 - OLJFJH_07120 0.28 -1.6
1,452,718 - OLJFJH_07120 0.28 -1.4
1,452,729 + OLJFJH_07120 0.30 -0.2
1,452,730 - OLJFJH_07120 0.30 -1.4
1,452,730 - OLJFJH_07120 0.30 -0.8
1,452,730 - OLJFJH_07120 0.30 -0.3
1,452,737 + OLJFJH_07120 0.31 +0.3
1,452,737 + OLJFJH_07120 0.31 +0.1
1,452,752 + OLJFJH_07120 0.33 -1.1
1,452,753 - OLJFJH_07120 0.34 -0.8
1,452,753 - OLJFJH_07120 0.34 -0.7
1,452,765 + OLJFJH_07120 0.36 -1.5
1,452,766 - OLJFJH_07120 0.36 -1.1
1,452,779 + OLJFJH_07120 0.38 -1.4
1,452,782 + OLJFJH_07120 0.38 -1.6
1,452,783 - OLJFJH_07120 0.38 -2.0
1,452,783 - OLJFJH_07120 0.38 -1.3
1,452,783 - OLJFJH_07120 0.38 -1.1
1,452,783 - OLJFJH_07120 0.38 -0.9
1,452,872 + OLJFJH_07120 0.52 -1.4
1,452,872 + OLJFJH_07120 0.52 -1.3
1,452,872 + OLJFJH_07120 0.52 -1.5
1,452,872 + OLJFJH_07120 0.52 -2.0
1,452,872 + OLJFJH_07120 0.52 -2.3
1,452,873 - OLJFJH_07120 0.53 -0.5
1,452,873 - OLJFJH_07120 0.53 -2.3
1,452,873 - OLJFJH_07120 0.53 +0.1
1,452,873 - OLJFJH_07120 0.53 -1.5
1,452,873 - OLJFJH_07120 0.53 -1.0
1,452,873 - OLJFJH_07120 0.53 -1.1
1,452,925 + OLJFJH_07120 0.61 -1.3
1,452,926 - OLJFJH_07120 0.61 -0.4
1,452,926 - OLJFJH_07120 0.61 -0.9

Or see this region's nucleotide sequence