Strain Fitness in Erwinia amylovora T8 around OLJFJH_06335

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06330 and OLJFJH_06335 are separated by 12 nucleotidesOLJFJH_06335 and OLJFJH_06340 are separated by 179 nucleotidesOLJFJH_06340 and OLJFJH_06345 are separated by 75 nucleotidesOLJFJH_06345 and OLJFJH_06350 are separated by 13 nucleotidesOLJFJH_06350 and OLJFJH_06355 are separated by 28 nucleotidesOLJFJH_06355 and OLJFJH_06360 are separated by 285 nucleotides OLJFJH_06330: OLJFJH_06330 - ECA oligosaccharide polymerase, at 1,283,126 to 1,284,484 _06330 OLJFJH_06335: OLJFJH_06335 - lipopolysaccharide N-acetylmannosaminouronosyltransferase, at 1,284,497 to 1,285,237 _06335 OLJFJH_06340: OLJFJH_06340 - tRNA-Arg, at 1,285,417 to 1,285,493 _06340 OLJFJH_06345: OLJFJH_06345 - tRNA-His, at 1,285,569 to 1,285,644 _06345 OLJFJH_06350: OLJFJH_06350 - tRNA-Leu, at 1,285,658 to 1,285,744 _06350 OLJFJH_06355: OLJFJH_06355 - tRNA-Pro, at 1,285,773 to 1,285,849 _06355 OLJFJH_06360: OLJFJH_06360 - tRNA-Pro, at 1,286,135 to 1,286,211 _06360 Position (kb) 1284 1285 1286Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1283.555 kb on + strand, within OLJFJH_06330at 1283.556 kb on - strand, within OLJFJH_06330at 1283.556 kb on - strand, within OLJFJH_06330at 1283.556 kb on - strand, within OLJFJH_06330at 1283.556 kb on - strand, within OLJFJH_06330at 1283.556 kb on - strand, within OLJFJH_06330at 1283.639 kb on + strand, within OLJFJH_06330at 1283.639 kb on + strand, within OLJFJH_06330at 1283.640 kb on - strand, within OLJFJH_06330at 1283.711 kb on + strand, within OLJFJH_06330at 1283.711 kb on + strand, within OLJFJH_06330at 1283.711 kb on + strand, within OLJFJH_06330at 1283.711 kb on + strand, within OLJFJH_06330at 1283.711 kb on + strand, within OLJFJH_06330at 1283.711 kb on + strand, within OLJFJH_06330at 1283.712 kb on - strand, within OLJFJH_06330at 1283.712 kb on - strand, within OLJFJH_06330at 1283.712 kb on - strand, within OLJFJH_06330at 1283.742 kb on + strand, within OLJFJH_06330at 1283.742 kb on + strand, within OLJFJH_06330at 1283.746 kb on + strand, within OLJFJH_06330at 1283.747 kb on - strand, within OLJFJH_06330at 1283.747 kb on - strand, within OLJFJH_06330at 1283.867 kb on - strand, within OLJFJH_06330at 1283.867 kb on - strand, within OLJFJH_06330at 1283.898 kb on - strand, within OLJFJH_06330at 1283.910 kb on - strand, within OLJFJH_06330at 1283.977 kb on - strand, within OLJFJH_06330at 1284.015 kb on - strand, within OLJFJH_06330at 1284.077 kb on + strand, within OLJFJH_06330at 1284.078 kb on - strand, within OLJFJH_06330at 1284.078 kb on - strand, within OLJFJH_06330at 1284.169 kb on + strand, within OLJFJH_06330at 1284.187 kb on + strand, within OLJFJH_06330at 1284.188 kb on - strand, within OLJFJH_06330at 1284.188 kb on - strand, within OLJFJH_06330at 1284.248 kb on - strand, within OLJFJH_06330at 1284.256 kb on + strand, within OLJFJH_06330at 1284.256 kb on + strand, within OLJFJH_06330at 1284.256 kb on + strand, within OLJFJH_06330at 1284.257 kb on - strand, within OLJFJH_06330at 1284.257 kb on - strand, within OLJFJH_06330at 1284.294 kb on + strand, within OLJFJH_06330at 1284.298 kb on + strand, within OLJFJH_06330at 1284.299 kb on - strand, within OLJFJH_06330at 1284.299 kb on - strand, within OLJFJH_06330at 1284.301 kb on + strand, within OLJFJH_06330at 1284.328 kb on - strand, within OLJFJH_06330at 1284.328 kb on - strand, within OLJFJH_06330at 1284.477 kb on + strandat 1284.478 kb on - strandat 1284.478 kb on - strandat 1284.511 kb on - strandat 1284.581 kb on + strand, within OLJFJH_06335at 1284.681 kb on + strand, within OLJFJH_06335at 1284.681 kb on + strand, within OLJFJH_06335at 1284.701 kb on + strand, within OLJFJH_06335at 1284.701 kb on + strand, within OLJFJH_06335at 1284.702 kb on - strand, within OLJFJH_06335at 1284.828 kb on + strand, within OLJFJH_06335at 1284.874 kb on + strand, within OLJFJH_06335at 1284.874 kb on + strand, within OLJFJH_06335at 1284.875 kb on - strand, within OLJFJH_06335at 1284.875 kb on - strand, within OLJFJH_06335at 1284.875 kb on - strand, within OLJFJH_06335at 1284.875 kb on - strand, within OLJFJH_06335at 1284.875 kb on - strand, within OLJFJH_06335at 1284.875 kb on - strand, within OLJFJH_06335at 1284.980 kb on - strand, within OLJFJH_06335at 1285.061 kb on + strand, within OLJFJH_06335at 1285.061 kb on + strand, within OLJFJH_06335at 1285.061 kb on + strand, within OLJFJH_06335at 1285.061 kb on + strand, within OLJFJH_06335at 1285.061 kb on + strand, within OLJFJH_06335at 1285.061 kb on + strand, within OLJFJH_06335at 1285.061 kb on + strand, within OLJFJH_06335at 1285.061 kb on + strand, within OLJFJH_06335at 1285.062 kb on - strand, within OLJFJH_06335at 1285.062 kb on - strand, within OLJFJH_06335at 1285.062 kb on - strand, within OLJFJH_06335at 1285.062 kb on - strand, within OLJFJH_06335at 1285.062 kb on - strand, within OLJFJH_06335at 1285.062 kb on - strand, within OLJFJH_06335at 1285.062 kb on - strand, within OLJFJH_06335at 1285.062 kb on - strand, within OLJFJH_06335at 1285.062 kb on - strand, within OLJFJH_06335at 1285.062 kb on - strand, within OLJFJH_06335at 1285.083 kb on - strand, within OLJFJH_06335at 1285.091 kb on + strand, within OLJFJH_06335at 1285.091 kb on + strand, within OLJFJH_06335at 1285.191 kb on + strandat 1285.202 kb on - strandat 1285.206 kb on - strandat 1285.206 kb on - strandat 1285.214 kb on + strandat 1285.214 kb on + strandat 1285.247 kb on + strandat 1285.248 kb on - strandat 1285.321 kb on + strandat 1285.322 kb on - strandat 1285.322 kb on - strandat 1285.322 kb on - strandat 1285.868 kb on + strandat 1285.987 kb on + strandat 1286.041 kb on - strandat 1286.041 kb on - strandat 1286.048 kb on + strandat 1286.048 kb on + strandat 1286.052 kb on + strandat 1286.053 kb on - strandat 1286.104 kb on + strandat 1286.113 kb on + strandat 1286.113 kb on + strandat 1286.123 kb on - strandat 1286.132 kb on - strandat 1286.132 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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1,283,555 + OLJFJH_06330 0.32 -0.9
1,283,556 - OLJFJH_06330 0.32 -1.1
1,283,556 - OLJFJH_06330 0.32 -1.9
1,283,556 - OLJFJH_06330 0.32 -2.1
1,283,556 - OLJFJH_06330 0.32 -1.3
1,283,556 - OLJFJH_06330 0.32 -2.2
1,283,639 + OLJFJH_06330 0.38 -3.9
1,283,639 + OLJFJH_06330 0.38 -2.3
1,283,640 - OLJFJH_06330 0.38 -3.1
1,283,711 + OLJFJH_06330 0.43 -2.3
1,283,711 + OLJFJH_06330 0.43 -0.7
1,283,711 + OLJFJH_06330 0.43 -1.4
1,283,711 + OLJFJH_06330 0.43 -2.1
1,283,711 + OLJFJH_06330 0.43 -2.7
1,283,711 + OLJFJH_06330 0.43 -0.9
1,283,712 - OLJFJH_06330 0.43 -3.4
1,283,712 - OLJFJH_06330 0.43 -3.1
1,283,712 - OLJFJH_06330 0.43 -0.4
1,283,742 + OLJFJH_06330 0.45 -1.4
1,283,742 + OLJFJH_06330 0.45 -3.0
1,283,746 + OLJFJH_06330 0.46 -2.4
1,283,747 - OLJFJH_06330 0.46 -1.9
1,283,747 - OLJFJH_06330 0.46 -2.5
1,283,867 - OLJFJH_06330 0.55 -1.7
1,283,867 - OLJFJH_06330 0.55 -1.9
1,283,898 - OLJFJH_06330 0.57 -1.6
1,283,910 - OLJFJH_06330 0.58 -2.1
1,283,977 - OLJFJH_06330 0.63 -2.7
1,284,015 - OLJFJH_06330 0.65 -1.8
1,284,077 + OLJFJH_06330 0.70 -2.0
1,284,078 - OLJFJH_06330 0.70 -2.4
1,284,078 - OLJFJH_06330 0.70 -1.9
1,284,169 + OLJFJH_06330 0.77 -1.4
1,284,187 + OLJFJH_06330 0.78 -0.4
1,284,188 - OLJFJH_06330 0.78 +0.0
1,284,188 - OLJFJH_06330 0.78 -2.4
1,284,248 - OLJFJH_06330 0.83 -2.5
1,284,256 + OLJFJH_06330 0.83 +0.9
1,284,256 + OLJFJH_06330 0.83 -0.4
1,284,256 + OLJFJH_06330 0.83 +0.3
1,284,257 - OLJFJH_06330 0.83 -2.2
1,284,257 - OLJFJH_06330 0.83 -1.7
1,284,294 + OLJFJH_06330 0.86 +0.9
1,284,298 + OLJFJH_06330 0.86 +0.9
1,284,299 - OLJFJH_06330 0.86 -1.7
1,284,299 - OLJFJH_06330 0.86 -1.5
1,284,301 + OLJFJH_06330 0.86 -0.1
1,284,328 - OLJFJH_06330 0.88 -1.4
1,284,328 - OLJFJH_06330 0.88 -2.2
1,284,477 + +0.2
1,284,478 - -2.9
1,284,478 - +0.3
1,284,511 - -0.9
1,284,581 + OLJFJH_06335 0.11 -4.1
1,284,681 + OLJFJH_06335 0.25 +0.8
1,284,681 + OLJFJH_06335 0.25 -2.3
1,284,701 + OLJFJH_06335 0.28 -3.2
1,284,701 + OLJFJH_06335 0.28 -2.9
1,284,702 - OLJFJH_06335 0.28 -2.4
1,284,828 + OLJFJH_06335 0.45 -2.3
1,284,874 + OLJFJH_06335 0.51 -3.1
1,284,874 + OLJFJH_06335 0.51 -2.4
1,284,875 - OLJFJH_06335 0.51 -4.4
1,284,875 - OLJFJH_06335 0.51 -2.8
1,284,875 - OLJFJH_06335 0.51 -1.9
1,284,875 - OLJFJH_06335 0.51 -0.7
1,284,875 - OLJFJH_06335 0.51 -1.4
1,284,875 - OLJFJH_06335 0.51 -0.9
1,284,980 - OLJFJH_06335 0.65 +0.3
1,285,061 + OLJFJH_06335 0.76 -1.4
1,285,061 + OLJFJH_06335 0.76 -1.8
1,285,061 + OLJFJH_06335 0.76 +0.9
1,285,061 + OLJFJH_06335 0.76 -2.2
1,285,061 + OLJFJH_06335 0.76 -0.9
1,285,061 + OLJFJH_06335 0.76 -2.4
1,285,061 + OLJFJH_06335 0.76 -2.9
1,285,061 + OLJFJH_06335 0.76 -3.1
1,285,062 - OLJFJH_06335 0.76 -1.7
1,285,062 - OLJFJH_06335 0.76 -2.5
1,285,062 - OLJFJH_06335 0.76 -3.0
1,285,062 - OLJFJH_06335 0.76 -1.7
1,285,062 - OLJFJH_06335 0.76 -1.5
1,285,062 - OLJFJH_06335 0.76 -2.2
1,285,062 - OLJFJH_06335 0.76 -1.2
1,285,062 - OLJFJH_06335 0.76 -3.3
1,285,062 - OLJFJH_06335 0.76 -0.0
1,285,062 - OLJFJH_06335 0.76 -0.1
1,285,083 - OLJFJH_06335 0.79 -3.0
1,285,091 + OLJFJH_06335 0.80 -3.3
1,285,091 + OLJFJH_06335 0.80 -0.8
1,285,191 + -3.1
1,285,202 - -3.6
1,285,206 - -1.9
1,285,206 - -2.6
1,285,214 + -2.9
1,285,214 + -0.7
1,285,247 + +1.8
1,285,248 - -0.3
1,285,321 + +1.1
1,285,322 - +0.3
1,285,322 - +1.3
1,285,322 - -0.2
1,285,868 + -1.5
1,285,987 + +0.1
1,286,041 - -0.7
1,286,041 - -1.0
1,286,048 + -0.4
1,286,048 + -0.5
1,286,052 + -0.6
1,286,053 - +0.5
1,286,104 + -0.5
1,286,113 + -0.7
1,286,113 + +0.0
1,286,123 - +1.0
1,286,132 - -0.7
1,286,132 - -0.9

Or see this region's nucleotide sequence