Strain Fitness in Erwinia amylovora T8 around OLJFJH_06315

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06305 and OLJFJH_06310 overlap by 23 nucleotidesOLJFJH_06310 and OLJFJH_06315 overlap by 4 nucleotidesOLJFJH_06315 and OLJFJH_06320 are separated by 1 nucleotides OLJFJH_06305: OLJFJH_06305 - glucose-1-phosphate thymidylyltransferase RfbA, at 1,278,117 to 1,278,998 _06305 OLJFJH_06310: OLJFJH_06310 - dTDP-4-amino-4 6-dideoxy-D-galactose acyltransferase, at 1,278,976 to 1,279,677 _06310 OLJFJH_06315: OLJFJH_06315 - dTDP-4-amino-4 6-dideoxygalactose transaminase, at 1,279,674 to 1,280,804 _06315 OLJFJH_06320: OLJFJH_06320 - lipid III flippase WzxE, at 1,280,806 to 1,282,056 _06320 Position (kb) 1279 1280 1281Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1278.726 kb on + strand, within OLJFJH_06305at 1278.726 kb on + strand, within OLJFJH_06305at 1278.727 kb on - strand, within OLJFJH_06305at 1278.758 kb on - strand, within OLJFJH_06305at 1278.758 kb on - strand, within OLJFJH_06305at 1278.824 kb on + strand, within OLJFJH_06305at 1278.827 kb on - strand, within OLJFJH_06305at 1278.957 kb on + strandat 1278.957 kb on + strandat 1278.957 kb on + strandat 1278.958 kb on - strandat 1278.993 kb on + strandat 1278.994 kb on - strandat 1279.172 kb on + strand, within OLJFJH_06310at 1279.173 kb on - strand, within OLJFJH_06310at 1279.251 kb on + strand, within OLJFJH_06310at 1279.251 kb on + strand, within OLJFJH_06310at 1279.343 kb on - strand, within OLJFJH_06310at 1279.431 kb on + strand, within OLJFJH_06310at 1279.615 kb on + strandat 1279.658 kb on + strandat 1279.658 kb on + strandat 1279.658 kb on + strandat 1279.659 kb on - strandat 1279.659 kb on - strandat 1279.659 kb on - strandat 1279.659 kb on - strandat 1279.659 kb on - strandat 1279.659 kb on - strandat 1279.661 kb on - strandat 1279.661 kb on - strandat 1279.662 kb on + strandat 1279.663 kb on - strandat 1279.663 kb on - strandat 1279.663 kb on - strandat 1279.670 kb on + strandat 1279.670 kb on + strandat 1279.671 kb on - strandat 1279.671 kb on - strandat 1279.714 kb on + strandat 1279.714 kb on + strandat 1279.714 kb on + strandat 1279.715 kb on - strandat 1279.715 kb on - strandat 1279.719 kb on + strandat 1279.720 kb on - strandat 1279.720 kb on - strandat 1279.814 kb on + strand, within OLJFJH_06315at 1279.898 kb on + strand, within OLJFJH_06315at 1279.908 kb on + strand, within OLJFJH_06315at 1279.908 kb on + strand, within OLJFJH_06315at 1279.909 kb on - strand, within OLJFJH_06315at 1279.911 kb on - strand, within OLJFJH_06315at 1279.940 kb on - strand, within OLJFJH_06315at 1280.154 kb on + strand, within OLJFJH_06315at 1280.155 kb on - strand, within OLJFJH_06315at 1280.220 kb on + strand, within OLJFJH_06315at 1280.220 kb on + strand, within OLJFJH_06315at 1280.221 kb on - strand, within OLJFJH_06315at 1280.222 kb on + strand, within OLJFJH_06315at 1280.339 kb on + strand, within OLJFJH_06315at 1280.343 kb on + strand, within OLJFJH_06315at 1280.343 kb on + strand, within OLJFJH_06315at 1280.343 kb on + strand, within OLJFJH_06315at 1280.343 kb on + strand, within OLJFJH_06315at 1280.344 kb on - strand, within OLJFJH_06315at 1280.344 kb on - strand, within OLJFJH_06315at 1280.370 kb on + strand, within OLJFJH_06315at 1280.463 kb on + strand, within OLJFJH_06315at 1280.464 kb on - strand, within OLJFJH_06315at 1280.546 kb on + strand, within OLJFJH_06315at 1280.546 kb on + strand, within OLJFJH_06315at 1280.546 kb on + strand, within OLJFJH_06315at 1280.546 kb on + strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.547 kb on - strand, within OLJFJH_06315at 1280.635 kb on - strand, within OLJFJH_06315at 1280.635 kb on - strand, within OLJFJH_06315at 1280.635 kb on - strand, within OLJFJH_06315at 1280.742 kb on + strandat 1280.788 kb on + strandat 1280.788 kb on + strandat 1280.789 kb on - strandat 1280.805 kb on + strandat 1280.805 kb on + strandat 1280.806 kb on - strandat 1280.806 kb on - strandat 1280.806 kb on - strandat 1280.806 kb on - strandat 1280.994 kb on + strand, within OLJFJH_06320at 1280.994 kb on + strand, within OLJFJH_06320at 1280.998 kb on + strand, within OLJFJH_06320at 1280.999 kb on - strand, within OLJFJH_06320at 1280.999 kb on - strand, within OLJFJH_06320at 1280.999 kb on - strand, within OLJFJH_06320at 1281.011 kb on - strand, within OLJFJH_06320at 1281.095 kb on + strand, within OLJFJH_06320at 1281.095 kb on + strand, within OLJFJH_06320at 1281.465 kb on + strand, within OLJFJH_06320at 1281.557 kb on + strand, within OLJFJH_06320at 1281.558 kb on - strand, within OLJFJH_06320at 1281.606 kb on + strand, within OLJFJH_06320at 1281.606 kb on + strand, within OLJFJH_06320at 1281.661 kb on - strand, within OLJFJH_06320at 1281.673 kb on - strand, within OLJFJH_06320at 1281.673 kb on - strand, within OLJFJH_06320

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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1,278,726 + OLJFJH_06305 0.69 -1.5
1,278,726 + OLJFJH_06305 0.69 -2.8
1,278,727 - OLJFJH_06305 0.69 -2.3
1,278,758 - OLJFJH_06305 0.73 -1.2
1,278,758 - OLJFJH_06305 0.73 -1.6
1,278,824 + OLJFJH_06305 0.80 -0.4
1,278,827 - OLJFJH_06305 0.80 -2.1
1,278,957 + -2.0
1,278,957 + -0.5
1,278,957 + -2.3
1,278,958 - -2.6
1,278,993 + -0.9
1,278,994 - -1.7
1,279,172 + OLJFJH_06310 0.28 -0.9
1,279,173 - OLJFJH_06310 0.28 -2.6
1,279,251 + OLJFJH_06310 0.39 -2.1
1,279,251 + OLJFJH_06310 0.39 -2.1
1,279,343 - OLJFJH_06310 0.52 -1.3
1,279,431 + OLJFJH_06310 0.65 +0.2
1,279,615 + -2.3
1,279,658 + -2.9
1,279,658 + -1.1
1,279,658 + -1.9
1,279,659 - -2.8
1,279,659 - -2.8
1,279,659 - -1.2
1,279,659 - -3.1
1,279,659 - -2.0
1,279,659 - -3.7
1,279,661 - -2.5
1,279,661 - -2.6
1,279,662 + +0.2
1,279,663 - -2.0
1,279,663 - -0.5
1,279,663 - -3.2
1,279,670 + -1.0
1,279,670 + -2.0
1,279,671 - -1.7
1,279,671 - -2.1
1,279,714 + -3.6
1,279,714 + -2.2
1,279,714 + -0.1
1,279,715 - -3.3
1,279,715 - -2.0
1,279,719 + -0.9
1,279,720 - -1.1
1,279,720 - -1.3
1,279,814 + OLJFJH_06315 0.12 -1.8
1,279,898 + OLJFJH_06315 0.20 -1.3
1,279,908 + OLJFJH_06315 0.21 -3.2
1,279,908 + OLJFJH_06315 0.21 -0.1
1,279,909 - OLJFJH_06315 0.21 -2.0
1,279,911 - OLJFJH_06315 0.21 -3.5
1,279,940 - OLJFJH_06315 0.24 -3.1
1,280,154 + OLJFJH_06315 0.42 -2.0
1,280,155 - OLJFJH_06315 0.43 -2.8
1,280,220 + OLJFJH_06315 0.48 -1.1
1,280,220 + OLJFJH_06315 0.48 -2.2
1,280,221 - OLJFJH_06315 0.48 -0.6
1,280,222 + OLJFJH_06315 0.48 -4.5
1,280,339 + OLJFJH_06315 0.59 -1.3
1,280,343 + OLJFJH_06315 0.59 -0.4
1,280,343 + OLJFJH_06315 0.59 -2.0
1,280,343 + OLJFJH_06315 0.59 -2.6
1,280,343 + OLJFJH_06315 0.59 -0.1
1,280,344 - OLJFJH_06315 0.59 -2.5
1,280,344 - OLJFJH_06315 0.59 -3.4
1,280,370 + OLJFJH_06315 0.62 -2.7
1,280,463 + OLJFJH_06315 0.70 -1.0
1,280,464 - OLJFJH_06315 0.70 -3.7
1,280,546 + OLJFJH_06315 0.77 -1.8
1,280,546 + OLJFJH_06315 0.77 -1.6
1,280,546 + OLJFJH_06315 0.77 -2.3
1,280,546 + OLJFJH_06315 0.77 -3.0
1,280,547 - OLJFJH_06315 0.77 -1.4
1,280,547 - OLJFJH_06315 0.77 -4.4
1,280,547 - OLJFJH_06315 0.77 -0.8
1,280,547 - OLJFJH_06315 0.77 -4.1
1,280,547 - OLJFJH_06315 0.77 -1.5
1,280,635 - OLJFJH_06315 0.85 -2.1
1,280,635 - OLJFJH_06315 0.85 -3.4
1,280,635 - OLJFJH_06315 0.85 -1.4
1,280,742 + -2.5
1,280,788 + -0.4
1,280,788 + -0.7
1,280,789 - -3.2
1,280,805 + -0.8
1,280,805 + -0.1
1,280,806 - -1.9
1,280,806 - -3.1
1,280,806 - -1.0
1,280,806 - -0.4
1,280,994 + OLJFJH_06320 0.15 +0.9
1,280,994 + OLJFJH_06320 0.15 +0.1
1,280,998 + OLJFJH_06320 0.15 -3.0
1,280,999 - OLJFJH_06320 0.15 +2.5
1,280,999 - OLJFJH_06320 0.15 +0.3
1,280,999 - OLJFJH_06320 0.15 -2.1
1,281,011 - OLJFJH_06320 0.16 -3.6
1,281,095 + OLJFJH_06320 0.23 -1.1
1,281,095 + OLJFJH_06320 0.23 -2.7
1,281,465 + OLJFJH_06320 0.53 -0.4
1,281,557 + OLJFJH_06320 0.60 -2.2
1,281,558 - OLJFJH_06320 0.60 -1.7
1,281,606 + OLJFJH_06320 0.64 +0.9
1,281,606 + OLJFJH_06320 0.64 -1.1
1,281,661 - OLJFJH_06320 0.68 -2.1
1,281,673 - OLJFJH_06320 0.69 -1.4
1,281,673 - OLJFJH_06320 0.69 -0.4

Or see this region's nucleotide sequence