Strain Fitness in Erwinia amylovora T8 around OLJFJH_06100

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_06095 and OLJFJH_06100 are separated by 2 nucleotidesOLJFJH_06100 and OLJFJH_06105 are separated by 253 nucleotides OLJFJH_06095: OLJFJH_06095 - cystathionine gamma-synthase, at 1,227,201 to 1,228,361 _06095 OLJFJH_06100: OLJFJH_06100 - bifunctional aspartate kinase/homoserine dehydrogenase II, at 1,228,364 to 1,230,799 _06100 OLJFJH_06105: OLJFJH_06105 - methylenetetrahydrofolate reductase, at 1,231,053 to 1,231,958 _06105 Position (kb) 1228 1229 1230 1231Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1227.420 kb on - strand, within OLJFJH_06095at 1227.536 kb on + strand, within OLJFJH_06095at 1227.665 kb on + strand, within OLJFJH_06095at 1227.796 kb on - strand, within OLJFJH_06095at 1227.893 kb on - strand, within OLJFJH_06095at 1227.915 kb on + strand, within OLJFJH_06095at 1227.915 kb on + strand, within OLJFJH_06095at 1227.971 kb on + strand, within OLJFJH_06095at 1227.971 kb on + strand, within OLJFJH_06095at 1227.971 kb on + strand, within OLJFJH_06095at 1227.972 kb on - strand, within OLJFJH_06095at 1227.972 kb on - strand, within OLJFJH_06095at 1227.972 kb on - strand, within OLJFJH_06095at 1228.070 kb on + strand, within OLJFJH_06095at 1228.070 kb on + strand, within OLJFJH_06095at 1228.071 kb on - strand, within OLJFJH_06095at 1228.099 kb on + strand, within OLJFJH_06095at 1228.099 kb on + strand, within OLJFJH_06095at 1228.099 kb on + strand, within OLJFJH_06095at 1228.100 kb on - strand, within OLJFJH_06095at 1228.159 kb on + strand, within OLJFJH_06095at 1228.370 kb on + strandat 1228.478 kb on + strandat 1228.479 kb on - strandat 1228.479 kb on - strandat 1228.479 kb on - strandat 1228.935 kb on + strand, within OLJFJH_06100at 1229.070 kb on + strand, within OLJFJH_06100at 1229.071 kb on - strand, within OLJFJH_06100at 1229.071 kb on - strand, within OLJFJH_06100at 1229.072 kb on + strand, within OLJFJH_06100at 1229.073 kb on - strand, within OLJFJH_06100at 1229.073 kb on - strand, within OLJFJH_06100at 1229.073 kb on - strand, within OLJFJH_06100at 1229.227 kb on + strand, within OLJFJH_06100at 1229.227 kb on + strand, within OLJFJH_06100at 1229.227 kb on + strand, within OLJFJH_06100at 1229.227 kb on + strand, within OLJFJH_06100at 1229.228 kb on - strand, within OLJFJH_06100at 1229.456 kb on + strand, within OLJFJH_06100at 1229.456 kb on + strand, within OLJFJH_06100at 1229.457 kb on - strand, within OLJFJH_06100at 1229.473 kb on - strand, within OLJFJH_06100at 1229.520 kb on + strand, within OLJFJH_06100at 1229.520 kb on + strand, within OLJFJH_06100at 1229.521 kb on - strand, within OLJFJH_06100at 1229.633 kb on - strand, within OLJFJH_06100at 1229.633 kb on - strand, within OLJFJH_06100at 1229.698 kb on + strand, within OLJFJH_06100at 1229.841 kb on - strand, within OLJFJH_06100at 1229.841 kb on - strand, within OLJFJH_06100at 1229.842 kb on + strand, within OLJFJH_06100at 1229.843 kb on - strand, within OLJFJH_06100at 1229.843 kb on - strand, within OLJFJH_06100at 1229.886 kb on - strand, within OLJFJH_06100at 1229.886 kb on - strand, within OLJFJH_06100at 1229.940 kb on + strand, within OLJFJH_06100at 1229.941 kb on - strand, within OLJFJH_06100at 1230.038 kb on + strand, within OLJFJH_06100at 1230.039 kb on - strand, within OLJFJH_06100at 1230.083 kb on - strand, within OLJFJH_06100at 1230.114 kb on - strand, within OLJFJH_06100at 1230.161 kb on + strand, within OLJFJH_06100at 1230.161 kb on + strand, within OLJFJH_06100at 1230.161 kb on + strand, within OLJFJH_06100at 1230.162 kb on - strand, within OLJFJH_06100at 1230.199 kb on + strand, within OLJFJH_06100at 1230.245 kb on - strand, within OLJFJH_06100at 1230.245 kb on - strand, within OLJFJH_06100at 1230.282 kb on + strand, within OLJFJH_06100at 1230.706 kb on + strandat 1230.797 kb on + strandat 1230.797 kb on + strandat 1230.798 kb on - strandat 1230.798 kb on - strandat 1230.801 kb on - strandat 1230.801 kb on - strandat 1230.809 kb on - strandat 1230.827 kb on - strandat 1230.836 kb on + strandat 1230.837 kb on - strandat 1230.900 kb on - strandat 1230.957 kb on + strandat 1230.957 kb on + strandat 1230.958 kb on - strandat 1230.958 kb on - strandat 1230.958 kb on - strandat 1230.972 kb on + strandat 1231.268 kb on + strand, within OLJFJH_06105at 1231.268 kb on + strand, within OLJFJH_06105at 1231.269 kb on - strand, within OLJFJH_06105at 1231.272 kb on - strand, within OLJFJH_06105at 1231.281 kb on - strand, within OLJFJH_06105at 1231.281 kb on - strand, within OLJFJH_06105at 1231.281 kb on - strand, within OLJFJH_06105at 1231.348 kb on + strand, within OLJFJH_06105at 1231.348 kb on + strand, within OLJFJH_06105at 1231.349 kb on - strand, within OLJFJH_06105at 1231.352 kb on + strand, within OLJFJH_06105at 1231.353 kb on - strand, within OLJFJH_06105at 1231.353 kb on - strand, within OLJFJH_06105at 1231.382 kb on + strand, within OLJFJH_06105at 1231.382 kb on + strand, within OLJFJH_06105at 1231.491 kb on - strand, within OLJFJH_06105at 1231.559 kb on + strand, within OLJFJH_06105at 1231.559 kb on + strand, within OLJFJH_06105at 1231.560 kb on - strand, within OLJFJH_06105at 1231.565 kb on + strand, within OLJFJH_06105at 1231.566 kb on - strand, within OLJFJH_06105at 1231.566 kb on - strand, within OLJFJH_06105at 1231.566 kb on - strand, within OLJFJH_06105at 1231.566 kb on - strand, within OLJFJH_06105at 1231.593 kb on - strand, within OLJFJH_06105at 1231.624 kb on - strand, within OLJFJH_06105at 1231.728 kb on - strand, within OLJFJH_06105

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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1,227,420 - OLJFJH_06095 0.19 -2.1
1,227,536 + OLJFJH_06095 0.29 -0.4
1,227,665 + OLJFJH_06095 0.40 -0.3
1,227,796 - OLJFJH_06095 0.51 +0.3
1,227,893 - OLJFJH_06095 0.60 -1.1
1,227,915 + OLJFJH_06095 0.61 +0.5
1,227,915 + OLJFJH_06095 0.61 -0.0
1,227,971 + OLJFJH_06095 0.66 -0.9
1,227,971 + OLJFJH_06095 0.66 -0.4
1,227,971 + OLJFJH_06095 0.66 +0.1
1,227,972 - OLJFJH_06095 0.66 -1.5
1,227,972 - OLJFJH_06095 0.66 -3.4
1,227,972 - OLJFJH_06095 0.66 -0.3
1,228,070 + OLJFJH_06095 0.75 -0.5
1,228,070 + OLJFJH_06095 0.75 +0.4
1,228,071 - OLJFJH_06095 0.75 -2.2
1,228,099 + OLJFJH_06095 0.77 -0.3
1,228,099 + OLJFJH_06095 0.77 -0.8
1,228,099 + OLJFJH_06095 0.77 -0.3
1,228,100 - OLJFJH_06095 0.77 -2.6
1,228,159 + OLJFJH_06095 0.83 -1.5
1,228,370 + -2.2
1,228,478 + -3.7
1,228,479 - -2.9
1,228,479 - -2.6
1,228,479 - -2.5
1,228,935 + OLJFJH_06100 0.23 -2.9
1,229,070 + OLJFJH_06100 0.29 -3.2
1,229,071 - OLJFJH_06100 0.29 -3.2
1,229,071 - OLJFJH_06100 0.29 -1.8
1,229,072 + OLJFJH_06100 0.29 -4.0
1,229,073 - OLJFJH_06100 0.29 -0.7
1,229,073 - OLJFJH_06100 0.29 -2.5
1,229,073 - OLJFJH_06100 0.29 -2.0
1,229,227 + OLJFJH_06100 0.35 -2.9
1,229,227 + OLJFJH_06100 0.35 -4.1
1,229,227 + OLJFJH_06100 0.35 -2.4
1,229,227 + OLJFJH_06100 0.35 -2.7
1,229,228 - OLJFJH_06100 0.35 -2.7
1,229,456 + OLJFJH_06100 0.45 -3.6
1,229,456 + OLJFJH_06100 0.45 -2.1
1,229,457 - OLJFJH_06100 0.45 -3.2
1,229,473 - OLJFJH_06100 0.46 -2.7
1,229,520 + OLJFJH_06100 0.47 -4.1
1,229,520 + OLJFJH_06100 0.47 -3.1
1,229,521 - OLJFJH_06100 0.47 -0.1
1,229,633 - OLJFJH_06100 0.52 -2.7
1,229,633 - OLJFJH_06100 0.52 -4.0
1,229,698 + OLJFJH_06100 0.55 -1.1
1,229,841 - OLJFJH_06100 0.61 -3.3
1,229,841 - OLJFJH_06100 0.61 -2.0
1,229,842 + OLJFJH_06100 0.61 -2.5
1,229,843 - OLJFJH_06100 0.61 -4.0
1,229,843 - OLJFJH_06100 0.61 -2.1
1,229,886 - OLJFJH_06100 0.62 -3.4
1,229,886 - OLJFJH_06100 0.62 -3.8
1,229,940 + OLJFJH_06100 0.65 -2.2
1,229,941 - OLJFJH_06100 0.65 -3.2
1,230,038 + OLJFJH_06100 0.69 -1.2
1,230,039 - OLJFJH_06100 0.69 -1.7
1,230,083 - OLJFJH_06100 0.71 -2.9
1,230,114 - OLJFJH_06100 0.72 -0.5
1,230,161 + OLJFJH_06100 0.74 -3.5
1,230,161 + OLJFJH_06100 0.74 +0.4
1,230,161 + OLJFJH_06100 0.74 -2.7
1,230,162 - OLJFJH_06100 0.74 -2.8
1,230,199 + OLJFJH_06100 0.75 -3.1
1,230,245 - OLJFJH_06100 0.77 -2.2
1,230,245 - OLJFJH_06100 0.77 -4.0
1,230,282 + OLJFJH_06100 0.79 -1.7
1,230,706 + -1.8
1,230,797 + -0.3
1,230,797 + -0.2
1,230,798 - -0.0
1,230,798 - -0.8
1,230,801 - -0.5
1,230,801 - +0.3
1,230,809 - -1.5
1,230,827 - +0.2
1,230,836 + -0.5
1,230,837 - +0.1
1,230,900 - +0.4
1,230,957 + +0.9
1,230,957 + +1.1
1,230,958 - -0.5
1,230,958 - -0.2
1,230,958 - +0.2
1,230,972 + +0.9
1,231,268 + OLJFJH_06105 0.24 +0.7
1,231,268 + OLJFJH_06105 0.24 +0.2
1,231,269 - OLJFJH_06105 0.24 +0.1
1,231,272 - OLJFJH_06105 0.24 +0.5
1,231,281 - OLJFJH_06105 0.25 +0.7
1,231,281 - OLJFJH_06105 0.25 +0.2
1,231,281 - OLJFJH_06105 0.25 +4.2
1,231,348 + OLJFJH_06105 0.33 -0.1
1,231,348 + OLJFJH_06105 0.33 +0.0
1,231,349 - OLJFJH_06105 0.33 -0.5
1,231,352 + OLJFJH_06105 0.33 +0.1
1,231,353 - OLJFJH_06105 0.33 -0.0
1,231,353 - OLJFJH_06105 0.33 +0.8
1,231,382 + OLJFJH_06105 0.36 +1.2
1,231,382 + OLJFJH_06105 0.36 +0.9
1,231,491 - OLJFJH_06105 0.48 +0.1
1,231,559 + OLJFJH_06105 0.56 +0.5
1,231,559 + OLJFJH_06105 0.56 -1.1
1,231,560 - OLJFJH_06105 0.56 +1.1
1,231,565 + OLJFJH_06105 0.57 -0.4
1,231,566 - OLJFJH_06105 0.57 +0.3
1,231,566 - OLJFJH_06105 0.57 -0.1
1,231,566 - OLJFJH_06105 0.57 +0.1
1,231,566 - OLJFJH_06105 0.57 -0.5
1,231,593 - OLJFJH_06105 0.60 +0.3
1,231,624 - OLJFJH_06105 0.63 -1.1
1,231,728 - OLJFJH_06105 0.75 +0.5

Or see this region's nucleotide sequence