Strain Fitness in Erwinia amylovora T8 around OLJFJH_05845

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_05840 and OLJFJH_05845 overlap by 4 nucleotidesOLJFJH_05845 and OLJFJH_05850 are separated by 160 nucleotides OLJFJH_05840: OLJFJH_05840 - glycosyl transferase family 1, at 1,178,670 to 1,179,797 _05840 OLJFJH_05845: OLJFJH_05845 - putative lipopolysaccharide heptosyltransferase III, at 1,179,794 to 1,180,867 _05845 OLJFJH_05850: OLJFJH_05850 - deacetylase, at 1,181,028 to 1,181,984 _05850 Position (kb) 1179 1180 1181Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1179.170 kb on - strand, within OLJFJH_05840at 1179.377 kb on + strand, within OLJFJH_05840at 1179.994 kb on + strand, within OLJFJH_05845at 1180.189 kb on + strand, within OLJFJH_05845at 1180.189 kb on + strand, within OLJFJH_05845at 1180.190 kb on - strand, within OLJFJH_05845at 1180.190 kb on - strand, within OLJFJH_05845at 1180.190 kb on - strand, within OLJFJH_05845at 1180.190 kb on - strand, within OLJFJH_05845at 1180.190 kb on - strand, within OLJFJH_05845at 1180.190 kb on - strand, within OLJFJH_05845at 1180.190 kb on - strand, within OLJFJH_05845at 1180.190 kb on - strand, within OLJFJH_05845at 1180.218 kb on - strand, within OLJFJH_05845at 1180.250 kb on - strand, within OLJFJH_05845at 1180.274 kb on + strand, within OLJFJH_05845at 1180.275 kb on - strand, within OLJFJH_05845at 1180.275 kb on - strand, within OLJFJH_05845at 1180.277 kb on + strand, within OLJFJH_05845at 1180.278 kb on - strand, within OLJFJH_05845at 1180.284 kb on + strand, within OLJFJH_05845at 1180.285 kb on - strand, within OLJFJH_05845at 1180.285 kb on - strand, within OLJFJH_05845at 1180.285 kb on - strand, within OLJFJH_05845at 1180.285 kb on - strand, within OLJFJH_05845at 1180.339 kb on - strand, within OLJFJH_05845at 1180.417 kb on + strand, within OLJFJH_05845at 1180.418 kb on - strand, within OLJFJH_05845at 1180.419 kb on - strand, within OLJFJH_05845at 1180.576 kb on - strand, within OLJFJH_05845at 1180.665 kb on + strand, within OLJFJH_05845at 1180.666 kb on - strand, within OLJFJH_05845at 1180.717 kb on - strand, within OLJFJH_05845at 1180.780 kb on + strandat 1180.780 kb on + strandat 1180.780 kb on + strandat 1180.781 kb on - strandat 1180.784 kb on + strandat 1180.784 kb on + strandat 1180.785 kb on - strandat 1180.785 kb on - strandat 1180.785 kb on - strandat 1180.870 kb on + strandat 1180.870 kb on + strandat 1180.871 kb on - strandat 1180.871 kb on - strandat 1180.871 kb on - strandat 1180.985 kb on + strandat 1180.986 kb on - strandat 1180.990 kb on - strandat 1180.990 kb on - strandat 1180.994 kb on + strandat 1180.995 kb on - strandat 1181.005 kb on + strandat 1181.005 kb on + strandat 1181.005 kb on + strandat 1181.006 kb on - strandat 1181.006 kb on - strandat 1181.034 kb on - strandat 1181.046 kb on - strandat 1181.152 kb on - strand, within OLJFJH_05850at 1181.152 kb on - strand, within OLJFJH_05850at 1181.152 kb on - strand, within OLJFJH_05850at 1181.159 kb on + strand, within OLJFJH_05850at 1181.182 kb on - strand, within OLJFJH_05850at 1181.205 kb on + strand, within OLJFJH_05850at 1181.205 kb on + strand, within OLJFJH_05850at 1181.205 kb on + strand, within OLJFJH_05850at 1181.251 kb on + strand, within OLJFJH_05850at 1181.251 kb on + strand, within OLJFJH_05850at 1181.251 kb on + strand, within OLJFJH_05850at 1181.251 kb on + strand, within OLJFJH_05850at 1181.251 kb on + strand, within OLJFJH_05850at 1181.252 kb on - strand, within OLJFJH_05850at 1181.252 kb on - strand, within OLJFJH_05850at 1181.252 kb on - strand, within OLJFJH_05850at 1181.255 kb on + strand, within OLJFJH_05850at 1181.255 kb on + strand, within OLJFJH_05850at 1181.256 kb on - strand, within OLJFJH_05850at 1181.256 kb on - strand, within OLJFJH_05850at 1181.289 kb on + strand, within OLJFJH_05850at 1181.289 kb on + strand, within OLJFJH_05850at 1181.319 kb on - strand, within OLJFJH_05850at 1181.348 kb on + strand, within OLJFJH_05850at 1181.349 kb on - strand, within OLJFJH_05850at 1181.370 kb on + strand, within OLJFJH_05850at 1181.370 kb on + strand, within OLJFJH_05850at 1181.370 kb on + strand, within OLJFJH_05850at 1181.371 kb on - strand, within OLJFJH_05850at 1181.371 kb on - strand, within OLJFJH_05850at 1181.371 kb on - strand, within OLJFJH_05850at 1181.394 kb on - strand, within OLJFJH_05850at 1181.451 kb on + strand, within OLJFJH_05850at 1181.452 kb on - strand, within OLJFJH_05850at 1181.510 kb on - strand, within OLJFJH_05850at 1181.559 kb on + strand, within OLJFJH_05850at 1181.589 kb on - strand, within OLJFJH_05850at 1181.655 kb on + strand, within OLJFJH_05850at 1181.655 kb on + strand, within OLJFJH_05850at 1181.656 kb on - strand, within OLJFJH_05850at 1181.684 kb on + strand, within OLJFJH_05850at 1181.694 kb on + strand, within OLJFJH_05850at 1181.711 kb on + strand, within OLJFJH_05850at 1181.811 kb on + strand, within OLJFJH_05850at 1181.812 kb on - strand, within OLJFJH_05850at 1181.822 kb on + strand, within OLJFJH_05850at 1181.867 kb on + strand, within OLJFJH_05850

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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1,179,170 - OLJFJH_05840 0.44 +0.9
1,179,377 + OLJFJH_05840 0.63 +1.9
1,179,994 + OLJFJH_05845 0.19 +1.9
1,180,189 + OLJFJH_05845 0.37 +0.9
1,180,189 + OLJFJH_05845 0.37 +0.3
1,180,190 - OLJFJH_05845 0.37 -2.9
1,180,190 - OLJFJH_05845 0.37 -0.5
1,180,190 - OLJFJH_05845 0.37 -2.3
1,180,190 - OLJFJH_05845 0.37 -2.1
1,180,190 - OLJFJH_05845 0.37 -1.7
1,180,190 - OLJFJH_05845 0.37 -2.2
1,180,190 - OLJFJH_05845 0.37 +1.4
1,180,190 - OLJFJH_05845 0.37 -0.9
1,180,218 - OLJFJH_05845 0.39 -2.2
1,180,250 - OLJFJH_05845 0.42 -2.8
1,180,274 + OLJFJH_05845 0.45 +0.3
1,180,275 - OLJFJH_05845 0.45 -1.5
1,180,275 - OLJFJH_05845 0.45 -0.1
1,180,277 + OLJFJH_05845 0.45 +0.9
1,180,278 - OLJFJH_05845 0.45 -1.0
1,180,284 + OLJFJH_05845 0.46 +1.9
1,180,285 - OLJFJH_05845 0.46 -0.7
1,180,285 - OLJFJH_05845 0.46 -0.4
1,180,285 - OLJFJH_05845 0.46 -1.1
1,180,285 - OLJFJH_05845 0.46 -1.8
1,180,339 - OLJFJH_05845 0.51 -2.2
1,180,417 + OLJFJH_05845 0.58 +0.3
1,180,418 - OLJFJH_05845 0.58 -0.5
1,180,419 - OLJFJH_05845 0.58 -1.8
1,180,576 - OLJFJH_05845 0.73 -2.0
1,180,665 + OLJFJH_05845 0.81 +1.9
1,180,666 - OLJFJH_05845 0.81 -1.1
1,180,717 - OLJFJH_05845 0.86 -0.9
1,180,780 + -0.1
1,180,780 + +1.9
1,180,780 + +1.9
1,180,781 - +0.5
1,180,784 + -0.1
1,180,784 + +0.3
1,180,785 - -1.7
1,180,785 - +0.3
1,180,785 - -0.1
1,180,870 + +0.3
1,180,870 + +0.3
1,180,871 - -0.3
1,180,871 - -1.7
1,180,871 - -1.3
1,180,985 + +0.3
1,180,986 - -0.7
1,180,990 - -2.3
1,180,990 - -0.1
1,180,994 + +0.1
1,180,995 - -3.3
1,181,005 + -0.1
1,181,005 + +0.6
1,181,005 + -0.9
1,181,006 - -0.7
1,181,006 - -1.9
1,181,034 - -3.7
1,181,046 - -2.1
1,181,152 - OLJFJH_05850 0.13 -2.5
1,181,152 - OLJFJH_05850 0.13 -1.4
1,181,152 - OLJFJH_05850 0.13 -0.7
1,181,159 + OLJFJH_05850 0.14 -0.0
1,181,182 - OLJFJH_05850 0.16 -0.3
1,181,205 + OLJFJH_05850 0.18 -2.4
1,181,205 + OLJFJH_05850 0.18 -1.7
1,181,205 + OLJFJH_05850 0.18 +0.7
1,181,251 + OLJFJH_05850 0.23 -0.7
1,181,251 + OLJFJH_05850 0.23 -0.5
1,181,251 + OLJFJH_05850 0.23 -2.7
1,181,251 + OLJFJH_05850 0.23 -1.3
1,181,251 + OLJFJH_05850 0.23 -2.2
1,181,252 - OLJFJH_05850 0.23 -2.6
1,181,252 - OLJFJH_05850 0.23 -2.5
1,181,252 - OLJFJH_05850 0.23 -2.9
1,181,255 + OLJFJH_05850 0.24 -1.6
1,181,255 + OLJFJH_05850 0.24 -1.7
1,181,256 - OLJFJH_05850 0.24 -0.1
1,181,256 - OLJFJH_05850 0.24 +1.0
1,181,289 + OLJFJH_05850 0.27 -1.2
1,181,289 + OLJFJH_05850 0.27 -0.5
1,181,319 - OLJFJH_05850 0.30 -1.1
1,181,348 + OLJFJH_05850 0.33 -1.6
1,181,349 - OLJFJH_05850 0.34 -1.1
1,181,370 + OLJFJH_05850 0.36 -0.4
1,181,370 + OLJFJH_05850 0.36 -1.6
1,181,370 + OLJFJH_05850 0.36 -1.8
1,181,371 - OLJFJH_05850 0.36 -1.5
1,181,371 - OLJFJH_05850 0.36 -0.5
1,181,371 - OLJFJH_05850 0.36 -2.3
1,181,394 - OLJFJH_05850 0.38 -1.9
1,181,451 + OLJFJH_05850 0.44 -1.7
1,181,452 - OLJFJH_05850 0.44 -3.4
1,181,510 - OLJFJH_05850 0.50 -3.7
1,181,559 + OLJFJH_05850 0.55 -2.5
1,181,589 - OLJFJH_05850 0.59 -0.9
1,181,655 + OLJFJH_05850 0.66 -2.8
1,181,655 + OLJFJH_05850 0.66 -1.8
1,181,656 - OLJFJH_05850 0.66 -2.8
1,181,684 + OLJFJH_05850 0.69 -0.7
1,181,694 + OLJFJH_05850 0.70 -2.4
1,181,711 + OLJFJH_05850 0.71 -1.6
1,181,811 + OLJFJH_05850 0.82 -0.9
1,181,812 - OLJFJH_05850 0.82 -0.5
1,181,822 + OLJFJH_05850 0.83 -3.6
1,181,867 + OLJFJH_05850 0.88 -2.6

Or see this region's nucleotide sequence