Strain Fitness in Erwinia amylovora T8 around OLJFJH_02420

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_02415 and OLJFJH_02420 are separated by 52 nucleotidesOLJFJH_02420 and OLJFJH_02425 are separated by 325 nucleotidesOLJFJH_02425 and OLJFJH_02430 are separated by 50 nucleotides OLJFJH_02415: OLJFJH_02415 - bifunctional 2' 3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase, at 432,227 to 434,161 _02415 OLJFJH_02420: OLJFJH_02420 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 434,214 to 434,834 _02420 OLJFJH_02425: OLJFJH_02425 - Opacity-associated protein A, at 435,160 to 435,708 _02425 OLJFJH_02430: OLJFJH_02430 - 50S ribosomal protein L9, at 435,759 to 436,211 _02430 Position (kb) 434 435Strain fitness (log2 ratio) -2 -1 0 1 2at 433.322 kb on + strand, within OLJFJH_02415at 433.323 kb on - strand, within OLJFJH_02415at 433.323 kb on - strand, within OLJFJH_02415at 433.397 kb on - strand, within OLJFJH_02415at 433.468 kb on + strand, within OLJFJH_02415at 433.487 kb on + strand, within OLJFJH_02415at 433.487 kb on + strand, within OLJFJH_02415at 433.487 kb on + strand, within OLJFJH_02415at 433.487 kb on + strand, within OLJFJH_02415at 433.487 kb on + strand, within OLJFJH_02415at 433.487 kb on + strand, within OLJFJH_02415at 433.488 kb on - strand, within OLJFJH_02415at 433.488 kb on - strand, within OLJFJH_02415at 433.488 kb on - strand, within OLJFJH_02415at 433.513 kb on + strand, within OLJFJH_02415at 433.513 kb on + strand, within OLJFJH_02415at 433.513 kb on + strand, within OLJFJH_02415at 433.514 kb on - strand, within OLJFJH_02415at 433.588 kb on + strand, within OLJFJH_02415at 433.639 kb on + strand, within OLJFJH_02415at 433.682 kb on + strand, within OLJFJH_02415at 433.682 kb on + strand, within OLJFJH_02415at 433.742 kb on + strand, within OLJFJH_02415at 433.743 kb on - strand, within OLJFJH_02415at 433.743 kb on - strand, within OLJFJH_02415at 433.743 kb on - strand, within OLJFJH_02415at 433.849 kb on + strand, within OLJFJH_02415at 433.850 kb on - strand, within OLJFJH_02415at 433.853 kb on + strand, within OLJFJH_02415at 433.854 kb on - strand, within OLJFJH_02415at 433.943 kb on + strand, within OLJFJH_02415at 433.944 kb on - strand, within OLJFJH_02415at 434.080 kb on + strandat 434.111 kb on + strandat 434.111 kb on + strandat 434.111 kb on + strandat 434.113 kb on + strandat 434.113 kb on + strandat 434.113 kb on + strandat 434.114 kb on - strandat 434.114 kb on - strandat 434.144 kb on + strandat 434.152 kb on - strandat 434.160 kb on - strandat 434.160 kb on - strandat 434.163 kb on + strandat 434.163 kb on + strandat 434.163 kb on + strandat 434.163 kb on + strandat 434.164 kb on - strandat 434.164 kb on - strandat 434.164 kb on - strandat 434.164 kb on - strandat 434.164 kb on - strandat 434.164 kb on - strandat 434.164 kb on - strandat 434.166 kb on - strandat 434.293 kb on + strand, within OLJFJH_02420at 434.455 kb on + strand, within OLJFJH_02420at 434.455 kb on + strand, within OLJFJH_02420at 434.456 kb on - strand, within OLJFJH_02420at 434.456 kb on - strand, within OLJFJH_02420at 434.466 kb on + strand, within OLJFJH_02420at 434.467 kb on - strand, within OLJFJH_02420at 434.670 kb on + strand, within OLJFJH_02420at 434.670 kb on + strand, within OLJFJH_02420at 434.671 kb on - strand, within OLJFJH_02420at 434.671 kb on - strand, within OLJFJH_02420at 434.671 kb on - strand, within OLJFJH_02420at 434.671 kb on - strand, within OLJFJH_02420at 434.671 kb on - strand, within OLJFJH_02420at 434.875 kb on + strandat 434.875 kb on + strandat 434.944 kb on + strandat 434.944 kb on + strandat 434.945 kb on - strandat 435.017 kb on + strandat 435.022 kb on + strandat 435.029 kb on + strandat 435.097 kb on - strandat 435.189 kb on - strandat 435.189 kb on - strandat 435.191 kb on + strandat 435.230 kb on + strand, within OLJFJH_02425at 435.231 kb on - strand, within OLJFJH_02425at 435.231 kb on - strand, within OLJFJH_02425at 435.231 kb on - strand, within OLJFJH_02425at 435.231 kb on - strand, within OLJFJH_02425at 435.463 kb on + strand, within OLJFJH_02425at 435.497 kb on + strand, within OLJFJH_02425at 435.497 kb on + strand, within OLJFJH_02425at 435.498 kb on - strand, within OLJFJH_02425at 435.498 kb on - strand, within OLJFJH_02425at 435.548 kb on + strand, within OLJFJH_02425at 435.556 kb on - strand, within OLJFJH_02425at 435.660 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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433,322 + OLJFJH_02415 0.57 -0.2
433,323 - OLJFJH_02415 0.57 -0.6
433,323 - OLJFJH_02415 0.57 -0.8
433,397 - OLJFJH_02415 0.60 -0.8
433,468 + OLJFJH_02415 0.64 -0.9
433,487 + OLJFJH_02415 0.65 -0.1
433,487 + OLJFJH_02415 0.65 -0.0
433,487 + OLJFJH_02415 0.65 +0.6
433,487 + OLJFJH_02415 0.65 -0.7
433,487 + OLJFJH_02415 0.65 -0.1
433,487 + OLJFJH_02415 0.65 +2.2
433,488 - OLJFJH_02415 0.65 -0.7
433,488 - OLJFJH_02415 0.65 -0.4
433,488 - OLJFJH_02415 0.65 -0.2
433,513 + OLJFJH_02415 0.66 +0.3
433,513 + OLJFJH_02415 0.66 +0.5
433,513 + OLJFJH_02415 0.66 -0.5
433,514 - OLJFJH_02415 0.67 -0.8
433,588 + OLJFJH_02415 0.70 +0.9
433,639 + OLJFJH_02415 0.73 -0.6
433,682 + OLJFJH_02415 0.75 +0.2
433,682 + OLJFJH_02415 0.75 -0.3
433,742 + OLJFJH_02415 0.78 -2.2
433,743 - OLJFJH_02415 0.78 -0.5
433,743 - OLJFJH_02415 0.78 +0.7
433,743 - OLJFJH_02415 0.78 +0.2
433,849 + OLJFJH_02415 0.84 -0.0
433,850 - OLJFJH_02415 0.84 +0.0
433,853 + OLJFJH_02415 0.84 -0.5
433,854 - OLJFJH_02415 0.84 +0.1
433,943 + OLJFJH_02415 0.89 -0.3
433,944 - OLJFJH_02415 0.89 -0.1
434,080 + +0.4
434,111 + +0.4
434,111 + -0.6
434,111 + -0.1
434,113 + -0.4
434,113 + -0.8
434,113 + -0.1
434,114 - -0.2
434,114 - -1.7
434,144 + -0.1
434,152 - -0.2
434,160 - -0.3
434,160 - -0.5
434,163 + -1.0
434,163 + -0.2
434,163 + -0.2
434,163 + -0.1
434,164 - -0.2
434,164 - -0.6
434,164 - +1.0
434,164 - -0.9
434,164 - -0.4
434,164 - +0.1
434,164 - +0.3
434,166 - +0.8
434,293 + OLJFJH_02420 0.13 -1.4
434,455 + OLJFJH_02420 0.39 -1.5
434,455 + OLJFJH_02420 0.39 -1.1
434,456 - OLJFJH_02420 0.39 -2.0
434,456 - OLJFJH_02420 0.39 -2.1
434,466 + OLJFJH_02420 0.41 -0.4
434,467 - OLJFJH_02420 0.41 -2.1
434,670 + OLJFJH_02420 0.73 +0.4
434,670 + OLJFJH_02420 0.73 -1.8
434,671 - OLJFJH_02420 0.74 -0.9
434,671 - OLJFJH_02420 0.74 -1.3
434,671 - OLJFJH_02420 0.74 -2.3
434,671 - OLJFJH_02420 0.74 -1.7
434,671 - OLJFJH_02420 0.74 -0.7
434,875 + -1.7
434,875 + -1.8
434,944 + +0.7
434,944 + -0.2
434,945 - -0.5
435,017 + +0.3
435,022 + +0.9
435,029 + +0.7
435,097 - +0.4
435,189 - -0.0
435,189 - +0.1
435,191 + -0.5
435,230 + OLJFJH_02425 0.13 -0.7
435,231 - OLJFJH_02425 0.13 -0.1
435,231 - OLJFJH_02425 0.13 -0.4
435,231 - OLJFJH_02425 0.13 +0.2
435,231 - OLJFJH_02425 0.13 -0.2
435,463 + OLJFJH_02425 0.55 -1.7
435,497 + OLJFJH_02425 0.61 -0.7
435,497 + OLJFJH_02425 0.61 -0.4
435,498 - OLJFJH_02425 0.62 +0.7
435,498 - OLJFJH_02425 0.62 -0.8
435,548 + OLJFJH_02425 0.71 -0.0
435,556 - OLJFJH_02425 0.72 +1.1
435,660 + +0.4

Or see this region's nucleotide sequence