Strain Fitness in Erwinia amylovora T8 around OLJFJH_01945

Experiment: Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01925 and OLJFJH_01930 are separated by 177 nucleotidesOLJFJH_01930 and OLJFJH_01935 are separated by 33 nucleotidesOLJFJH_01935 and OLJFJH_01940 are separated by 31 nucleotidesOLJFJH_01940 and OLJFJH_01945 are separated by 94 nucleotidesOLJFJH_01945 and OLJFJH_01950 are separated by 246 nucleotides OLJFJH_01925: OLJFJH_01925 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 341,918 to 342,946 _01925 OLJFJH_01930: OLJFJH_01930 - tRNA-Leu, at 343,124 to 343,210 _01930 OLJFJH_01935: OLJFJH_01935 - tRNA-Leu, at 343,244 to 343,330 _01935 OLJFJH_01940: OLJFJH_01940 - tRNA-Leu, at 343,362 to 343,448 _01940 OLJFJH_01945: OLJFJH_01945 - DUF1435 domain-containing protein, at 343,543 to 343,776 _01945 OLJFJH_01950: OLJFJH_01950 - GGDEF domain-containing protein, at 344,023 to 345,120 _01950 Position (kb) 343 344Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 342.663 kb on + strand, within OLJFJH_01925at 342.663 kb on + strand, within OLJFJH_01925at 342.663 kb on + strand, within OLJFJH_01925at 342.663 kb on + strand, within OLJFJH_01925at 342.664 kb on - strand, within OLJFJH_01925at 342.712 kb on + strand, within OLJFJH_01925at 342.712 kb on + strand, within OLJFJH_01925at 342.712 kb on + strand, within OLJFJH_01925at 342.712 kb on + strand, within OLJFJH_01925at 342.712 kb on + strand, within OLJFJH_01925at 342.713 kb on - strand, within OLJFJH_01925at 342.713 kb on - strand, within OLJFJH_01925at 342.713 kb on - strand, within OLJFJH_01925at 342.713 kb on - strand, within OLJFJH_01925at 342.713 kb on - strand, within OLJFJH_01925at 342.713 kb on - strand, within OLJFJH_01925at 342.713 kb on - strand, within OLJFJH_01925at 342.954 kb on + strandat 343.047 kb on + strandat 343.059 kb on + strandat 343.059 kb on + strandat 343.059 kb on + strandat 343.060 kb on - strandat 343.067 kb on - strandat 343.076 kb on - strandat 343.099 kb on + strandat 343.101 kb on + strandat 343.101 kb on + strandat 343.102 kb on - strandat 343.102 kb on - strandat 343.102 kb on - strandat 343.102 kb on - strandat 343.110 kb on + strandat 343.110 kb on + strandat 343.111 kb on - strandat 343.111 kb on - strandat 343.113 kb on - strandat 343.113 kb on - strandat 343.113 kb on - strandat 343.227 kb on + strandat 343.231 kb on - strandat 343.231 kb on - strandat 343.231 kb on - strandat 343.347 kb on + strandat 343.347 kb on + strandat 343.347 kb on + strandat 343.475 kb on + strandat 343.475 kb on + strandat 343.476 kb on - strandat 343.513 kb on + strandat 343.514 kb on - strandat 343.514 kb on - strandat 343.517 kb on + strandat 343.518 kb on - strandat 343.632 kb on + strand, within OLJFJH_01945at 343.675 kb on + strand, within OLJFJH_01945at 343.777 kb on + strandat 343.830 kb on + strandat 343.995 kb on + strandat 343.996 kb on - strandat 344.019 kb on + strandat 344.019 kb on + strandat 344.175 kb on + strand, within OLJFJH_01950at 344.175 kb on + strand, within OLJFJH_01950at 344.240 kb on + strand, within OLJFJH_01950at 344.283 kb on + strand, within OLJFJH_01950at 344.312 kb on - strand, within OLJFJH_01950at 344.312 kb on - strand, within OLJFJH_01950at 344.326 kb on + strand, within OLJFJH_01950at 344.327 kb on - strand, within OLJFJH_01950at 344.327 kb on - strand, within OLJFJH_01950at 344.443 kb on - strand, within OLJFJH_01950at 344.454 kb on + strand, within OLJFJH_01950at 344.454 kb on + strand, within OLJFJH_01950at 344.454 kb on + strand, within OLJFJH_01950at 344.455 kb on - strand, within OLJFJH_01950at 344.455 kb on - strand, within OLJFJH_01950at 344.455 kb on - strand, within OLJFJH_01950at 344.461 kb on - strand, within OLJFJH_01950at 344.461 kb on - strand, within OLJFJH_01950at 344.472 kb on + strand, within OLJFJH_01950at 344.533 kb on - strand, within OLJFJH_01950at 344.582 kb on - strand, within OLJFJH_01950at 344.595 kb on + strand, within OLJFJH_01950at 344.596 kb on - strand, within OLJFJH_01950at 344.620 kb on + strand, within OLJFJH_01950at 344.620 kb on + strand, within OLJFJH_01950at 344.621 kb on - strand, within OLJFJH_01950at 344.621 kb on - strand, within OLJFJH_01950at 344.621 kb on - strand, within OLJFJH_01950at 344.621 kb on - strand, within OLJFJH_01950at 344.638 kb on - strand, within OLJFJH_01950at 344.638 kb on - strand, within OLJFJH_01950at 344.683 kb on + strand, within OLJFJH_01950at 344.683 kb on + strand, within OLJFJH_01950at 344.683 kb on + strand, within OLJFJH_01950at 344.683 kb on + strand, within OLJFJH_01950at 344.684 kb on - strand, within OLJFJH_01950at 344.684 kb on - strand, within OLJFJH_01950at 344.719 kb on + strand, within OLJFJH_01950at 344.719 kb on + strand, within OLJFJH_01950at 344.720 kb on - strand, within OLJFJH_01950at 344.720 kb on - strand, within OLJFJH_01950at 344.720 kb on - strand, within OLJFJH_01950

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:KB soft agar;Phage:inactivated cocktail;Temp:28;Samp:31-1
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342,663 + OLJFJH_01925 0.72 +0.2
342,663 + OLJFJH_01925 0.72 -0.5
342,663 + OLJFJH_01925 0.72 -0.3
342,663 + OLJFJH_01925 0.72 +0.4
342,664 - OLJFJH_01925 0.72 -0.1
342,712 + OLJFJH_01925 0.77 +0.1
342,712 + OLJFJH_01925 0.77 +0.8
342,712 + OLJFJH_01925 0.77 +0.8
342,712 + OLJFJH_01925 0.77 -0.0
342,712 + OLJFJH_01925 0.77 -0.3
342,713 - OLJFJH_01925 0.77 +0.3
342,713 - OLJFJH_01925 0.77 -0.1
342,713 - OLJFJH_01925 0.77 +0.0
342,713 - OLJFJH_01925 0.77 +0.1
342,713 - OLJFJH_01925 0.77 +0.0
342,713 - OLJFJH_01925 0.77 -0.8
342,713 - OLJFJH_01925 0.77 -0.1
342,954 + +0.7
343,047 + +0.2
343,059 + +0.2
343,059 + -2.2
343,059 + +0.1
343,060 - -1.2
343,067 - -1.2
343,076 - -0.1
343,099 + -3.1
343,101 + -0.1
343,101 + +0.0
343,102 - +2.0
343,102 - -0.3
343,102 - +1.0
343,102 - +1.1
343,110 + +0.2
343,110 + -0.2
343,111 - +0.8
343,111 - -0.4
343,113 - +0.1
343,113 - +0.2
343,113 - -0.6
343,227 + -0.2
343,231 - +0.6
343,231 - -0.0
343,231 - +0.5
343,347 + -0.2
343,347 + +0.2
343,347 + +0.3
343,475 + +0.7
343,475 + -0.3
343,476 - +0.1
343,513 + -1.7
343,514 - +1.0
343,514 - -0.6
343,517 + -1.8
343,518 - +0.4
343,632 + OLJFJH_01945 0.38 -1.9
343,675 + OLJFJH_01945 0.56 -1.3
343,777 + +0.7
343,830 + +1.2
343,995 + +4.5
343,996 - +0.2
344,019 + +0.0
344,019 + -0.5
344,175 + OLJFJH_01950 0.14 +0.2
344,175 + OLJFJH_01950 0.14 +0.4
344,240 + OLJFJH_01950 0.20 +0.3
344,283 + OLJFJH_01950 0.24 -0.6
344,312 - OLJFJH_01950 0.26 -0.1
344,312 - OLJFJH_01950 0.26 -0.2
344,326 + OLJFJH_01950 0.28 -0.8
344,327 - OLJFJH_01950 0.28 -0.1
344,327 - OLJFJH_01950 0.28 +0.0
344,443 - OLJFJH_01950 0.38 -0.2
344,454 + OLJFJH_01950 0.39 -0.5
344,454 + OLJFJH_01950 0.39 -0.6
344,454 + OLJFJH_01950 0.39 +0.2
344,455 - OLJFJH_01950 0.39 -0.0
344,455 - OLJFJH_01950 0.39 +0.8
344,455 - OLJFJH_01950 0.39 -0.8
344,461 - OLJFJH_01950 0.40 -1.1
344,461 - OLJFJH_01950 0.40 +0.4
344,472 + OLJFJH_01950 0.41 -0.6
344,533 - OLJFJH_01950 0.46 +0.3
344,582 - OLJFJH_01950 0.51 +0.0
344,595 + OLJFJH_01950 0.52 -1.0
344,596 - OLJFJH_01950 0.52 -0.5
344,620 + OLJFJH_01950 0.54 +0.4
344,620 + OLJFJH_01950 0.54 +0.6
344,621 - OLJFJH_01950 0.54 +0.4
344,621 - OLJFJH_01950 0.54 -0.6
344,621 - OLJFJH_01950 0.54 +0.5
344,621 - OLJFJH_01950 0.54 +0.2
344,638 - OLJFJH_01950 0.56 -1.9
344,638 - OLJFJH_01950 0.56 -0.1
344,683 + OLJFJH_01950 0.60 -0.2
344,683 + OLJFJH_01950 0.60 -0.2
344,683 + OLJFJH_01950 0.60 -2.6
344,683 + OLJFJH_01950 0.60 +0.1
344,684 - OLJFJH_01950 0.60 -0.3
344,684 - OLJFJH_01950 0.60 +0.2
344,719 + OLJFJH_01950 0.63 +0.1
344,719 + OLJFJH_01950 0.63 -0.1
344,720 - OLJFJH_01950 0.63 -0.2
344,720 - OLJFJH_01950 0.63 +0.4
344,720 - OLJFJH_01950 0.63 -1.8

Or see this region's nucleotide sequence