Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS12830

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
2,440,820	+				-0.5
2,440,911	-		LU632_RS12825	0.31	-0.1
2,441,004	+		LU632_RS12825	0.67	+0.7
2,441,005	-		LU632_RS12825	0.67	+0.6
2,441,098	+				+1.2
2,441,159	-				-0.6
2,441,164	+				-0.5
2,441,165	-				-2.0
2,441,199	+				-0.2
2,441,200	-				-0.8
2,441,201	+				-0.5
2,441,283	-		LU632_RS12830	0.16	-0.6
2,441,286	-		LU632_RS12830	0.17	+0.6
2,441,306	+		LU632_RS12830	0.20	-0.3
2,441,307	-		LU632_RS12830	0.20	-1.8
2,441,319	+		LU632_RS12830	0.21	-0.6
2,441,415	+		LU632_RS12830	0.35	-1.3
2,441,450	+		LU632_RS12830	0.39	+1.6
2,441,451	-		LU632_RS12830	0.40	-0.1
2,441,456	+		LU632_RS12830	0.40	-0.9
2,441,456	+		LU632_RS12830	0.40	-0.6
2,441,505	-		LU632_RS12830	0.47	+2.8
2,441,513	+		LU632_RS12830	0.48	-0.7
2,441,559	+		LU632_RS12830	0.54	+0.4
2,441,571	-		LU632_RS12830	0.56	+0.0
2,441,571	-		LU632_RS12830	0.56	-1.2
2,441,795	-		LU632_RS12830	0.87	-1.8
2,441,829	-				+1.2
2,441,892	-				-1.0
2,441,892	-				-1.0
2,441,903	+				+0.8
2,441,904	-				-0.4
2,441,906	-				+0.8
2,441,906	-				+0.8
2,441,906	-				-0.8
2,441,906	-				+5.5
2,441,910	-				-1.8
2,441,925	+				-1.9
2,441,935	+				-0.6
2,441,995	+				+3.2
2,442,048	-				-0.5
2,442,080	-				-0.9
2,442,111	+				-0.7
2,442,112	-				-0.3
2,442,184	+		LU632_RS12835	0.30	-0.6
2,442,185	-		LU632_RS12835	0.30	-0.2
2,442,209	+		LU632_RS12835	0.38	+1.4
2,442,279	-		LU632_RS12835	0.62	+0.2
2,442,334	-		LU632_RS12835	0.80	+0.7
2,442,334	-		LU632_RS12835	0.80	+0.2
2,442,454	+				+0.7
2,442,494	-				+1.4
2,442,494	-				-0.9
2,442,498	-				-2.3
2,442,593	+				-0.4