Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS09585

Experiment: plant=Melon; plant sample=M4; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M4; plant location=P2
1,815,049	+	rimO	LU632_RS09580	0.68	-0.3
1,815,055	+	rimO	LU632_RS09580	0.68	-0.1
1,815,056	-	rimO	LU632_RS09580	0.68	-1.9
1,815,056	-	rimO	LU632_RS09580	0.68	+0.3
1,815,123	-	rimO	LU632_RS09580	0.73	+0.2
1,815,123	-	rimO	LU632_RS09580	0.73	+0.4
1,815,123	-	rimO	LU632_RS09580	0.73	-0.0
1,815,130	+	rimO	LU632_RS09580	0.74	-1.3
1,815,130	+	rimO	LU632_RS09580	0.74	+1.0
1,815,131	-	rimO	LU632_RS09580	0.74	-1.2
1,815,131	-	rimO	LU632_RS09580	0.74	+1.1
1,815,135	-	rimO	LU632_RS09580	0.74	+0.6
1,815,135	-	rimO	LU632_RS09580	0.74	-1.3
1,815,161	-	rimO	LU632_RS09580	0.76	-0.8
1,815,385	-				-1.3
1,815,575	+				+0.7
1,815,575	+				-0.6
1,815,576	-				+0.3
1,815,621	+				-0.6
1,815,635	+				+0.4
1,815,680	+				+2.8
1,815,704	+				+1.0
1,815,705	-				-1.1
1,815,822	+				+0.6
1,815,823	-				-0.6
1,815,823	-				+0.8
1,815,890	+		LU632_RS09585	0.33	-1.0
1,815,921	-		LU632_RS09585	0.46	-0.6
1,815,940	+		LU632_RS09585	0.54	-0.3
1,815,952	+		LU632_RS09585	0.59	-1.7
1,815,953	-		LU632_RS09585	0.60	-1.4
1,816,025	-				-0.8
1,816,828	+		LU632_RS09590	0.54	+2.0