Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS02400

Experiment: plant=Melon; plant sample=M4; plant location=P2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS02395 and LU632_RS02400 overlap by 4 nucleotidesLU632_RS02400 and LU632_RS02405 are separated by 300 nucleotides LU632_RS02395: LU632_RS02395 - carbonic anhydrase, at 475,478 to 476,104 _RS02395 LU632_RS02400: LU632_RS02400 - SulP family inorganic anion transporter, at 476,101 to 477,585 _RS02400 LU632_RS02405: LU632_RS02405 - AI-2E family transporter, at 477,886 to 478,946 _RS02405 Position (kb) 476 477 478Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 475.227 kb on + strandat 475.381 kb on + strandat 475.381 kb on + strandat 475.382 kb on - strandat 475.382 kb on - strandat 475.389 kb on - strandat 475.490 kb on - strandat 475.540 kb on + strandat 475.541 kb on - strand, within LU632_RS02395at 475.541 kb on - strand, within LU632_RS02395at 475.541 kb on - strand, within LU632_RS02395at 475.596 kb on + strand, within LU632_RS02395at 475.670 kb on - strand, within LU632_RS02395at 475.682 kb on - strand, within LU632_RS02395at 475.716 kb on + strand, within LU632_RS02395at 475.717 kb on - strand, within LU632_RS02395at 475.717 kb on - strand, within LU632_RS02395at 475.725 kb on - strand, within LU632_RS02395at 475.742 kb on - strand, within LU632_RS02395at 475.773 kb on - strand, within LU632_RS02395at 475.773 kb on - strand, within LU632_RS02395at 475.773 kb on - strand, within LU632_RS02395at 475.863 kb on + strand, within LU632_RS02395at 475.864 kb on - strand, within LU632_RS02395at 476.025 kb on + strand, within LU632_RS02395at 476.025 kb on + strand, within LU632_RS02395at 476.097 kb on + strandat 476.129 kb on + strandat 476.142 kb on - strandat 476.349 kb on - strand, within LU632_RS02400at 476.349 kb on - strand, within LU632_RS02400at 476.553 kb on + strand, within LU632_RS02400at 476.553 kb on + strand, within LU632_RS02400at 476.553 kb on + strand, within LU632_RS02400at 476.554 kb on - strand, within LU632_RS02400at 476.599 kb on - strand, within LU632_RS02400at 476.599 kb on - strand, within LU632_RS02400at 476.603 kb on + strand, within LU632_RS02400at 476.604 kb on - strand, within LU632_RS02400at 476.667 kb on + strand, within LU632_RS02400at 476.676 kb on - strand, within LU632_RS02400at 476.688 kb on + strand, within LU632_RS02400at 476.689 kb on - strand, within LU632_RS02400at 476.689 kb on - strand, within LU632_RS02400at 476.746 kb on - strand, within LU632_RS02400at 476.746 kb on - strand, within LU632_RS02400at 476.746 kb on - strand, within LU632_RS02400at 476.833 kb on + strand, within LU632_RS02400at 476.834 kb on - strand, within LU632_RS02400at 476.964 kb on + strand, within LU632_RS02400at 476.997 kb on + strand, within LU632_RS02400at 476.997 kb on + strand, within LU632_RS02400at 477.000 kb on + strand, within LU632_RS02400at 477.001 kb on - strand, within LU632_RS02400at 477.068 kb on + strand, within LU632_RS02400at 477.124 kb on - strand, within LU632_RS02400at 477.166 kb on + strand, within LU632_RS02400at 477.167 kb on - strand, within LU632_RS02400at 477.223 kb on + strand, within LU632_RS02400at 477.223 kb on + strand, within LU632_RS02400at 477.367 kb on + strand, within LU632_RS02400at 477.367 kb on + strand, within LU632_RS02400at 477.367 kb on + strand, within LU632_RS02400at 477.467 kb on - strandat 477.472 kb on - strandat 477.484 kb on - strandat 477.497 kb on + strandat 477.544 kb on - strandat 477.544 kb on - strandat 477.584 kb on - strandat 477.668 kb on - strandat 477.752 kb on + strandat 477.755 kb on + strandat 477.756 kb on - strandat 477.790 kb on - strandat 477.791 kb on + strandat 477.791 kb on + strandat 477.792 kb on - strandat 477.792 kb on - strandat 477.843 kb on + strandat 477.844 kb on - strandat 477.857 kb on + strandat 477.880 kb on - strandat 477.880 kb on - strandat 477.973 kb on + strandat 478.053 kb on + strand, within LU632_RS02405at 478.106 kb on + strand, within LU632_RS02405at 478.107 kb on - strand, within LU632_RS02405at 478.107 kb on - strand, within LU632_RS02405at 478.176 kb on + strand, within LU632_RS02405at 478.179 kb on + strand, within LU632_RS02405at 478.180 kb on - strand, within LU632_RS02405at 478.294 kb on - strand, within LU632_RS02405at 478.400 kb on - strand, within LU632_RS02405at 478.413 kb on + strand, within LU632_RS02405at 478.446 kb on + strand, within LU632_RS02405at 478.446 kb on + strand, within LU632_RS02405at 478.446 kb on + strand, within LU632_RS02405at 478.501 kb on - strand, within LU632_RS02405at 478.549 kb on + strand, within LU632_RS02405

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Per-strain Table

Position Strand Gene LocusTag Fraction plant=Melon; plant sample=M4; plant location=P2
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475,227 + +0.7
475,381 + +1.3
475,381 + -0.9
475,382 - +0.5
475,382 - +0.4
475,389 - +0.3
475,490 - -0.5
475,540 + +0.7
475,541 - LU632_RS02395 0.10 -0.9
475,541 - LU632_RS02395 0.10 -0.7
475,541 - LU632_RS02395 0.10 -0.8
475,596 + LU632_RS02395 0.19 -2.6
475,670 - LU632_RS02395 0.31 +0.7
475,682 - LU632_RS02395 0.33 -0.9
475,716 + LU632_RS02395 0.38 +1.7
475,717 - LU632_RS02395 0.38 -0.3
475,717 - LU632_RS02395 0.38 +0.1
475,725 - LU632_RS02395 0.39 -1.0
475,742 - LU632_RS02395 0.42 +1.3
475,773 - LU632_RS02395 0.47 -0.3
475,773 - LU632_RS02395 0.47 +1.4
475,773 - LU632_RS02395 0.47 +1.3
475,863 + LU632_RS02395 0.61 +0.1
475,864 - LU632_RS02395 0.62 +1.7
476,025 + LU632_RS02395 0.87 -0.6
476,025 + LU632_RS02395 0.87 +1.1
476,097 + -0.1
476,129 + +0.4
476,142 - +0.7
476,349 - LU632_RS02400 0.17 +0.2
476,349 - LU632_RS02400 0.17 -0.9
476,553 + LU632_RS02400 0.30 +1.3
476,553 + LU632_RS02400 0.30 -1.0
476,553 + LU632_RS02400 0.30 +0.3
476,554 - LU632_RS02400 0.31 +2.5
476,599 - LU632_RS02400 0.34 -1.3
476,599 - LU632_RS02400 0.34 +0.9
476,603 + LU632_RS02400 0.34 -1.1
476,604 - LU632_RS02400 0.34 +2.7
476,667 + LU632_RS02400 0.38 +0.4
476,676 - LU632_RS02400 0.39 +0.9
476,688 + LU632_RS02400 0.40 -0.1
476,689 - LU632_RS02400 0.40 -0.3
476,689 - LU632_RS02400 0.40 -0.6
476,746 - LU632_RS02400 0.43 -1.2
476,746 - LU632_RS02400 0.43 +0.1
476,746 - LU632_RS02400 0.43 +0.4
476,833 + LU632_RS02400 0.49 -0.3
476,834 - LU632_RS02400 0.49 -0.1
476,964 + LU632_RS02400 0.58 -0.5
476,997 + LU632_RS02400 0.60 +0.7
476,997 + LU632_RS02400 0.60 +1.7
477,000 + LU632_RS02400 0.61 -0.0
477,001 - LU632_RS02400 0.61 -1.7
477,068 + LU632_RS02400 0.65 -1.4
477,124 - LU632_RS02400 0.69 -0.6
477,166 + LU632_RS02400 0.72 +1.0
477,167 - LU632_RS02400 0.72 +1.0
477,223 + LU632_RS02400 0.76 -0.9
477,223 + LU632_RS02400 0.76 -1.4
477,367 + LU632_RS02400 0.85 -0.1
477,367 + LU632_RS02400 0.85 +0.2
477,367 + LU632_RS02400 0.85 +1.3
477,467 - -1.4
477,472 - -1.4
477,484 - +2.1
477,497 + -0.3
477,544 - -1.0
477,544 - +3.9
477,584 - -1.0
477,668 - -0.8
477,752 + +1.3
477,755 + +0.3
477,756 - +0.2
477,790 - +0.3
477,791 + +0.6
477,791 + +0.3
477,792 - +0.3
477,792 - -0.9
477,843 + -0.2
477,844 - -1.3
477,857 + +0.1
477,880 - -0.6
477,880 - +0.3
477,973 + +3.3
478,053 + LU632_RS02405 0.16 -0.9
478,106 + LU632_RS02405 0.21 +0.1
478,107 - LU632_RS02405 0.21 +2.5
478,107 - LU632_RS02405 0.21 +1.0
478,176 + LU632_RS02405 0.27 +1.2
478,179 + LU632_RS02405 0.28 +1.8
478,180 - LU632_RS02405 0.28 -2.2
478,294 - LU632_RS02405 0.38 -1.8
478,400 - LU632_RS02405 0.48 -2.0
478,413 + LU632_RS02405 0.50 -0.9
478,446 + LU632_RS02405 0.53 -0.1
478,446 + LU632_RS02405 0.53 -1.4
478,446 + LU632_RS02405 0.53 +0.7
478,501 - LU632_RS02405 0.58 +1.3
478,549 + LU632_RS02405 0.62 -0.1

Or see this region's nucleotide sequence