Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21745

Experiment: plant=Melon; plant sample=M2; plant location=P2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	plant=Melon; plant sample=M2; plant location=P2
4,154,899	+				-0.5
4,154,899	+				-0.6
4,154,899	+				-2.2
4,154,899	+				-1.1
4,154,899	+				-1.8
4,154,900	-				-1.1
4,154,900	-				-0.5
4,154,904	+				-1.0
4,154,904	+				+0.1
4,154,905	-				+0.4
4,154,921	-				-0.4
4,154,921	-				+2.9
4,154,924	+				-1.5
4,154,971	+				-0.3
4,154,972	-				+0.8
4,154,972	-				+1.0
4,154,991	+				-1.2
4,155,101	+				+0.2
4,155,121	-				+0.4
4,155,141	-				-0.1
4,155,145	-				-0.0
4,155,232	-		LU632_RS21735	0.24	-1.2
4,155,243	+		LU632_RS21735	0.26	+0.5
4,155,245	+		LU632_RS21735	0.26	-1.2
4,155,246	-		LU632_RS21735	0.26	-0.8
4,155,246	-		LU632_RS21735	0.26	-0.2
4,155,286	-		LU632_RS21735	0.33	+0.0
4,155,319	-		LU632_RS21735	0.39	+0.8
4,155,319	-		LU632_RS21735	0.39	+1.0
4,155,507	+		LU632_RS21735	0.71	-0.2
4,155,507	+		LU632_RS21735	0.71	+0.1
4,155,511	-		LU632_RS21735	0.72	+1.4
4,155,543	+		LU632_RS21735	0.78	-0.4
4,155,666	-				+0.6
4,155,700	+		LU632_RS21740	0.11	-1.5
4,155,917	+				-1.2
4,155,918	-				-0.7
4,155,970	+	rlmB	LU632_RS21745	0.12	-0.0
4,155,970	+	rlmB	LU632_RS21745	0.12	+0.1
4,155,971	-	rlmB	LU632_RS21745	0.12	+0.8
4,155,971	-	rlmB	LU632_RS21745	0.12	-0.7
4,156,068	+	rlmB	LU632_RS21745	0.25	-1.3
4,156,069	-	rlmB	LU632_RS21745	0.26	-2.5
4,156,273	+	rlmB	LU632_RS21745	0.53	-0.2
4,156,537	+	rlmB	LU632_RS21745	0.89	-2.3
4,156,542	-				+0.8
4,156,651	+				-1.1
4,156,736	-				+1.8
4,156,810	+				-1.5
4,156,942	+	rnr	LU632_RS21750	0.13	+1.6
4,157,043	+	rnr	LU632_RS21750	0.17	+1.9
4,157,043	+	rnr	LU632_RS21750	0.17	+0.6
4,157,274	+	rnr	LU632_RS21750	0.26	+0.2
4,157,337	+	rnr	LU632_RS21750	0.29	-1.0
4,157,389	+	rnr	LU632_RS21750	0.31	+2.9
4,157,400	+	rnr	LU632_RS21750	0.31	-0.2
4,157,446	-	rnr	LU632_RS21750	0.33	-0.2
4,157,520	-	rnr	LU632_RS21750	0.36	-1.1