Experiment: JK42
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mipA and yeaG are separated by 435 nucleotides yeaG and yeaH are separated by 112 nucleotides
MCAODC_18695: mipA - scaffolding protein MipA, at 596,599 to 597,345
mipA
MCAODC_18700: yeaG - protein kinase YeaG, at 597,781 to 599,715
yeaG
MCAODC_18705: yeaH - UPF0229 protein YeaH, at 599,828 to 601,111
yeaH
Position (kb) 597
598
599
600 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 596.781 kb on - strand, within mipA at 596.826 kb on - strand, within mipA at 596.826 kb on - strand, within mipA at 596.826 kb on - strand, within mipA at 596.828 kb on + strand, within mipA at 596.829 kb on - strand, within mipA at 596.829 kb on - strand, within mipA at 596.829 kb on - strand, within mipA at 596.832 kb on - strand, within mipA at 596.832 kb on - strand, within mipA at 596.832 kb on - strand, within mipA at 596.832 kb on - strand, within mipA at 596.901 kb on - strand, within mipA at 596.953 kb on - strand, within mipA at 596.985 kb on - strand, within mipA at 597.002 kb on + strand, within mipA at 597.003 kb on - strand, within mipA at 597.031 kb on - strand, within mipA at 597.031 kb on - strand, within mipA at 597.031 kb on - strand, within mipA at 597.084 kb on - strand, within mipA at 597.084 kb on - strand, within mipA at 597.106 kb on - strand, within mipA at 597.118 kb on - strand, within mipA at 597.140 kb on + strand, within mipA at 597.141 kb on - strand, within mipA at 597.141 kb on - strand, within mipA at 597.141 kb on - strand, within mipA at 597.141 kb on - strand, within mipA at 597.144 kb on - strand, within mipA at 597.144 kb on - strand, within mipA at 597.186 kb on - strand, within mipA at 597.186 kb on - strand, within mipA at 597.186 kb on - strand, within mipA at 597.229 kb on - strand, within mipA at 597.231 kb on - strand, within mipA at 597.251 kb on - strand, within mipA at 597.350 kb on - strand at 597.400 kb on - strand at 597.519 kb on + strand at 597.528 kb on + strand at 597.556 kb on + strand at 597.557 kb on - strand at 597.607 kb on + strand at 597.607 kb on + strand at 597.607 kb on + strand at 597.627 kb on + strand at 597.628 kb on - strand at 597.728 kb on + strand at 597.728 kb on + strand at 597.757 kb on + strand at 597.940 kb on - strand at 598.099 kb on + strand, within yeaG at 598.356 kb on + strand, within yeaG at 598.356 kb on + strand, within yeaG at 598.630 kb on + strand, within yeaG at 599.090 kb on + strand, within yeaG at 599.090 kb on + strand, within yeaG at 599.091 kb on - strand, within yeaG at 599.122 kb on + strand, within yeaG at 599.122 kb on + strand, within yeaG at 599.201 kb on - strand, within yeaG at 599.252 kb on - strand, within yeaG at 599.301 kb on + strand, within yeaG at 599.703 kb on + strand at 599.703 kb on + strand at 599.704 kb on - strand at 599.798 kb on + strand at 599.798 kb on + strand at 599.798 kb on + strand at 599.798 kb on + strand at 599.799 kb on - strand at 599.799 kb on - strand at 599.827 kb on + strand at 599.827 kb on + strand at 599.828 kb on - strand at 599.840 kb on - strand at 599.904 kb on - strand at 599.905 kb on + strand at 599.906 kb on - strand at 600.272 kb on - strand, within yeaH at 600.292 kb on + strand, within yeaH at 600.483 kb on + strand, within yeaH at 600.483 kb on + strand, within yeaH at 600.529 kb on - strand, within yeaH at 600.543 kb on - strand, within yeaH at 600.657 kb on - strand, within yeaH at 600.678 kb on - strand, within yeaH at 600.679 kb on + strand, within yeaH at 600.698 kb on + strand, within yeaH at 600.698 kb on + strand, within yeaH at 600.698 kb on + strand, within yeaH at 600.712 kb on + strand, within yeaH at 600.713 kb on - strand, within yeaH
Per-strain Table
Position Strand Gene LocusTag Fraction JK42 remove 596,781 - mipA MCAODC_18695 0.24 -3.2 596,826 - mipA MCAODC_18695 0.30 +1.7 596,826 - mipA MCAODC_18695 0.30 +1.7 596,826 - mipA MCAODC_18695 0.30 -3.0 596,828 + mipA MCAODC_18695 0.31 +0.6 596,829 - mipA MCAODC_18695 0.31 +3.0 596,829 - mipA MCAODC_18695 0.31 +0.1 596,829 - mipA MCAODC_18695 0.31 +0.7 596,832 - mipA MCAODC_18695 0.31 -0.2 596,832 - mipA MCAODC_18695 0.31 +0.7 596,832 - mipA MCAODC_18695 0.31 +0.4 596,832 - mipA MCAODC_18695 0.31 -0.2 596,901 - mipA MCAODC_18695 0.40 -0.3 596,953 - mipA MCAODC_18695 0.47 -0.4 596,985 - mipA MCAODC_18695 0.52 +1.5 597,002 + mipA MCAODC_18695 0.54 -0.7 597,003 - mipA MCAODC_18695 0.54 +1.2 597,031 - mipA MCAODC_18695 0.58 +0.0 597,031 - mipA MCAODC_18695 0.58 +0.2 597,031 - mipA MCAODC_18695 0.58 +0.5 597,084 - mipA MCAODC_18695 0.65 +1.3 597,084 - mipA MCAODC_18695 0.65 -0.3 597,106 - mipA MCAODC_18695 0.68 +0.6 597,118 - mipA MCAODC_18695 0.69 +1.4 597,140 + mipA MCAODC_18695 0.72 -0.6 597,141 - mipA MCAODC_18695 0.73 +0.6 597,141 - mipA MCAODC_18695 0.73 -0.3 597,141 - mipA MCAODC_18695 0.73 +1.3 597,141 - mipA MCAODC_18695 0.73 +2.7 597,144 - mipA MCAODC_18695 0.73 +1.4 597,144 - mipA MCAODC_18695 0.73 +0.5 597,186 - mipA MCAODC_18695 0.79 -0.6 597,186 - mipA MCAODC_18695 0.79 +1.2 597,186 - mipA MCAODC_18695 0.79 +0.0 597,229 - mipA MCAODC_18695 0.84 +1.2 597,231 - mipA MCAODC_18695 0.85 +1.1 597,251 - mipA MCAODC_18695 0.87 -2.7 597,350 - +0.7 597,400 - +1.5 597,519 + +0.2 597,528 + -0.7 597,556 + +0.0 597,557 - -0.1 597,607 + +1.2 597,607 + -0.9 597,607 + -1.4 597,627 + +0.8 597,628 - +1.8 597,728 + +0.2 597,728 + -2.3 597,757 + +0.2 597,940 - +0.2 598,099 + yeaG MCAODC_18700 0.16 +1.2 598,356 + yeaG MCAODC_18700 0.30 +0.9 598,356 + yeaG MCAODC_18700 0.30 +0.2 598,630 + yeaG MCAODC_18700 0.44 -2.4 599,090 + yeaG MCAODC_18700 0.68 +1.2 599,090 + yeaG MCAODC_18700 0.68 -2.2 599,091 - yeaG MCAODC_18700 0.68 +1.9 599,122 + yeaG MCAODC_18700 0.69 +2.2 599,122 + yeaG MCAODC_18700 0.69 -0.8 599,201 - yeaG MCAODC_18700 0.73 +2.7 599,252 - yeaG MCAODC_18700 0.76 -0.8 599,301 + yeaG MCAODC_18700 0.79 -0.8 599,703 + -0.1 599,703 + -3.1 599,704 - +2.8 599,798 + +2.8 599,798 + +1.6 599,798 + +0.8 599,798 + -1.0 599,799 - -3.8 599,799 - +0.9 599,827 + -2.6 599,827 + +1.2 599,828 - -1.8 599,840 - +0.9 599,904 - +4.1 599,905 + +1.2 599,906 - +3.3 600,272 - yeaH MCAODC_18705 0.35 +0.2 600,292 + yeaH MCAODC_18705 0.36 -3.2 600,483 + yeaH MCAODC_18705 0.51 +2.5 600,483 + yeaH MCAODC_18705 0.51 +1.4 600,529 - yeaH MCAODC_18705 0.55 +0.3 600,543 - yeaH MCAODC_18705 0.56 -0.3 600,657 - yeaH MCAODC_18705 0.65 -1.4 600,678 - yeaH MCAODC_18705 0.66 -1.8 600,679 + yeaH MCAODC_18705 0.66 -2.4 600,698 + yeaH MCAODC_18705 0.68 -0.8 600,698 + yeaH MCAODC_18705 0.68 -0.8 600,698 + yeaH MCAODC_18705 0.68 +0.2 600,712 + yeaH MCAODC_18705 0.69 -0.2 600,713 - yeaH MCAODC_18705 0.69 -2.8
Or see this region's nucleotide sequence