Experiment: LB no stress 48 hours
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5036 and Pf6N2E2_5037 are separated by 28 nucleotides Pf6N2E2_5037 and Pf6N2E2_5038 are separated by 95 nucleotides
Pf6N2E2_5036 - Cobalt-zinc-cadmium resistance protein, at 5,811,920 to 5,812,813
_5036
Pf6N2E2_5037 - Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase), at 5,812,842 to 5,813,261
_5037
Pf6N2E2_5038 - ATP-dependent helicase HrpB, at 5,813,357 to 5,815,873
_5038
Position (kb) 5812
5813
5814 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5811.890 kb on - strand at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.242 kb on + strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.243 kb on - strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.442 kb on + strand, within Pf6N2E2_5036 at 5812.443 kb on - strand, within Pf6N2E2_5036 at 5812.523 kb on + strand, within Pf6N2E2_5036 at 5812.623 kb on + strand, within Pf6N2E2_5036 at 5812.623 kb on + strand, within Pf6N2E2_5036 at 5812.834 kb on - strand at 5813.048 kb on - strand, within Pf6N2E2_5037 at 5813.048 kb on - strand, within Pf6N2E2_5037 at 5813.101 kb on + strand, within Pf6N2E2_5037 at 5813.101 kb on + strand, within Pf6N2E2_5037 at 5813.101 kb on + strand, within Pf6N2E2_5037 at 5813.101 kb on + strand, within Pf6N2E2_5037 at 5813.102 kb on - strand, within Pf6N2E2_5037 at 5813.102 kb on - strand, within Pf6N2E2_5037 at 5813.102 kb on - strand, within Pf6N2E2_5037 at 5813.179 kb on + strand, within Pf6N2E2_5037 at 5813.180 kb on - strand, within Pf6N2E2_5037 at 5813.255 kb on + strand at 5813.256 kb on - strand at 5813.261 kb on + strand at 5813.261 kb on + strand at 5813.261 kb on + strand at 5813.262 kb on - strand at 5813.262 kb on - strand at 5813.262 kb on - strand at 5813.262 kb on - strand at 5813.262 kb on - strand at 5813.280 kb on + strand at 5813.280 kb on + strand at 5813.280 kb on + strand at 5813.280 kb on + strand at 5813.281 kb on - strand at 5813.281 kb on - strand at 5813.313 kb on + strand at 5813.314 kb on - strand at 5813.329 kb on - strand at 5813.330 kb on + strand at 5813.330 kb on + strand at 5813.386 kb on - strand at 5813.575 kb on + strand at 5813.709 kb on + strand, within Pf6N2E2_5038 at 5813.710 kb on - strand, within Pf6N2E2_5038
Per-strain Table
Position Strand Gene LocusTag Fraction LB no stress 48 hours remove 5,811,890 - -0.9 5,812,242 + Pf6N2E2_5036 0.36 +0.8 5,812,242 + Pf6N2E2_5036 0.36 +0.2 5,812,242 + Pf6N2E2_5036 0.36 +0.9 5,812,242 + Pf6N2E2_5036 0.36 +0.3 5,812,242 + Pf6N2E2_5036 0.36 -0.6 5,812,243 - Pf6N2E2_5036 0.36 -1.5 5,812,243 - Pf6N2E2_5036 0.36 -0.4 5,812,243 - Pf6N2E2_5036 0.36 -0.8 5,812,243 - Pf6N2E2_5036 0.36 -1.6 5,812,243 - Pf6N2E2_5036 0.36 +0.4 5,812,442 + Pf6N2E2_5036 0.58 -0.5 5,812,442 + Pf6N2E2_5036 0.58 -0.6 5,812,442 + Pf6N2E2_5036 0.58 +1.3 5,812,442 + Pf6N2E2_5036 0.58 +0.5 5,812,442 + Pf6N2E2_5036 0.58 -1.6 5,812,443 - Pf6N2E2_5036 0.59 +0.2 5,812,523 + Pf6N2E2_5036 0.67 +0.6 5,812,623 + Pf6N2E2_5036 0.79 -2.7 5,812,623 + Pf6N2E2_5036 0.79 +0.5 5,812,834 - -1.4 5,813,048 - Pf6N2E2_5037 0.49 -0.2 5,813,048 - Pf6N2E2_5037 0.49 -0.6 5,813,101 + Pf6N2E2_5037 0.62 +1.9 5,813,101 + Pf6N2E2_5037 0.62 +1.2 5,813,101 + Pf6N2E2_5037 0.62 +0.6 5,813,101 + Pf6N2E2_5037 0.62 -0.3 5,813,102 - Pf6N2E2_5037 0.62 +0.2 5,813,102 - Pf6N2E2_5037 0.62 +0.9 5,813,102 - Pf6N2E2_5037 0.62 +0.5 5,813,179 + Pf6N2E2_5037 0.80 +1.5 5,813,180 - Pf6N2E2_5037 0.80 -0.4 5,813,255 + -0.1 5,813,256 - -0.1 5,813,261 + +0.5 5,813,261 + +1.2 5,813,261 + +0.9 5,813,262 - -1.5 5,813,262 - -1.2 5,813,262 - +0.2 5,813,262 - -1.0 5,813,262 - +0.9 5,813,280 + +0.3 5,813,280 + +0.4 5,813,280 + +0.4 5,813,280 + -2.0 5,813,281 - +0.2 5,813,281 - -0.4 5,813,313 + +0.1 5,813,314 - -0.6 5,813,329 - +0.0 5,813,330 + +0.0 5,813,330 + -0.2 5,813,386 - -0.1 5,813,575 + -1.1 5,813,709 + Pf6N2E2_5038 0.14 -0.6 5,813,710 - Pf6N2E2_5038 0.14 -1.7
Or see this region's nucleotide sequence