Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0898 and Dshi_0899 overlap by 4 nucleotides Dshi_0899 and Dshi_0900 are separated by 14 nucleotides
Dshi_0898: Dshi_0898 - hypothetical protein (RefSeq), at 918,640 to 921,318
_0898
Dshi_0899: Dshi_0899 - hypothetical protein (RefSeq), at 921,315 to 922,355
_0899
Dshi_0900: Dshi_0900 - hypothetical protein (RefSeq), at 922,370 to 924,292
_0900
Position (kb) 921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 920.325 kb on + strand, within Dshi_0898 at 920.360 kb on - strand, within Dshi_0898 at 920.467 kb on + strand, within Dshi_0898 at 920.475 kb on - strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.477 kb on + strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.485 kb on - strand, within Dshi_0898 at 920.714 kb on + strand, within Dshi_0898 at 920.874 kb on - strand, within Dshi_0898 at 920.910 kb on + strand, within Dshi_0898 at 921.054 kb on - strand at 921.100 kb on + strand at 921.177 kb on + strand at 921.577 kb on - strand, within Dshi_0899 at 921.607 kb on + strand, within Dshi_0899 at 921.864 kb on - strand, within Dshi_0899 at 921.866 kb on + strand, within Dshi_0899 at 921.874 kb on - strand at 922.016 kb on + strand, within Dshi_0899 at 922.033 kb on + strand, within Dshi_0899 at 922.088 kb on + strand, within Dshi_0899 at 922.155 kb on + strand, within Dshi_0899 at 922.163 kb on - strand, within Dshi_0899 at 922.262 kb on + strand at 922.294 kb on + strand at 922.317 kb on - strand at 922.372 kb on - strand at 922.387 kb on + strand at 922.490 kb on + strand at 922.521 kb on - strand at 922.540 kb on - strand at 922.634 kb on - strand, within Dshi_0900 at 922.693 kb on - strand, within Dshi_0900 at 922.757 kb on - strand, within Dshi_0900 at 922.887 kb on - strand, within Dshi_0900 at 923.027 kb on - strand, within Dshi_0900 at 923.068 kb on + strand, within Dshi_0900 at 923.068 kb on + strand, within Dshi_0900 at 923.113 kb on + strand, within Dshi_0900 at 923.143 kb on + strand, within Dshi_0900 at 923.296 kb on - strand, within Dshi_0900 at 923.319 kb on + strand, within Dshi_0900
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 920,325 + Dshi_0898 0.63 -0.2 920,360 - Dshi_0898 0.64 +0.3 920,467 + Dshi_0898 0.68 -0.3 920,475 - Dshi_0898 0.68 +1.4 920,477 + Dshi_0898 0.69 -0.8 920,477 + Dshi_0898 0.69 -1.4 920,477 + Dshi_0898 0.69 -0.2 920,477 + Dshi_0898 0.69 -0.9 920,485 - Dshi_0898 0.69 -0.1 920,485 - Dshi_0898 0.69 -0.9 920,485 - Dshi_0898 0.69 +0.6 920,485 - Dshi_0898 0.69 +1.5 920,714 + Dshi_0898 0.77 -0.9 920,874 - Dshi_0898 0.83 -0.8 920,910 + Dshi_0898 0.85 +0.4 921,054 - +0.2 921,100 + -0.2 921,177 + -0.2 921,577 - Dshi_0899 0.25 -0.1 921,607 + Dshi_0899 0.28 -0.5 921,864 - Dshi_0899 0.53 -0.6 921,866 + Dshi_0899 0.53 +1.2 921,874 - -0.4 922,016 + Dshi_0899 0.67 -0.5 922,033 + Dshi_0899 0.69 -1.0 922,088 + Dshi_0899 0.74 -0.5 922,155 + Dshi_0899 0.81 +0.2 922,163 - Dshi_0899 0.81 -0.4 922,262 + -1.2 922,294 + -0.5 922,317 - +0.9 922,372 - +0.2 922,387 + -0.3 922,490 + +0.5 922,521 - -2.3 922,540 - -0.3 922,634 - Dshi_0900 0.14 -1.3 922,693 - Dshi_0900 0.17 -0.1 922,757 - Dshi_0900 0.20 +0.6 922,887 - Dshi_0900 0.27 -1.3 923,027 - Dshi_0900 0.34 -0.1 923,068 + Dshi_0900 0.36 +0.2 923,068 + Dshi_0900 0.36 -0.1 923,113 + Dshi_0900 0.39 -0.3 923,143 + Dshi_0900 0.40 -0.3 923,296 - Dshi_0900 0.48 -0.1 923,319 + Dshi_0900 0.49 -3.1
Or see this region's nucleotide sequence