Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0755 and Dshi_0756 overlap by 15 nucleotides Dshi_0756 and Dshi_0757 are separated by 3 nucleotides
Dshi_0755: Dshi_0755 - MATE efflux family protein (RefSeq), at 765,229 to 766,599
_0755
Dshi_0756: Dshi_0756 - hypothetical protein (RefSeq), at 766,585 to 767,244
_0756
Dshi_0757: Dshi_0757 - selenium-binding protein (RefSeq), at 767,248 to 768,648
_0757
Position (kb) 766
767
768 Strain fitness (log2 ratio) -1
0
1 at 765.605 kb on + strand, within Dshi_0755 at 765.624 kb on - strand, within Dshi_0755 at 765.653 kb on + strand, within Dshi_0755 at 765.659 kb on - strand, within Dshi_0755 at 765.812 kb on + strand, within Dshi_0755 at 765.890 kb on + strand, within Dshi_0755 at 766.108 kb on - strand, within Dshi_0755 at 766.108 kb on - strand, within Dshi_0755 at 766.219 kb on + strand, within Dshi_0755 at 766.220 kb on - strand, within Dshi_0755 at 766.392 kb on + strand, within Dshi_0755 at 766.430 kb on + strand, within Dshi_0755 at 766.430 kb on + strand, within Dshi_0755 at 766.459 kb on + strand, within Dshi_0755 at 766.690 kb on + strand, within Dshi_0756 at 766.816 kb on + strand, within Dshi_0756 at 767.048 kb on + strand, within Dshi_0756 at 767.069 kb on + strand, within Dshi_0756 at 767.220 kb on + strand at 767.276 kb on + strand at 767.280 kb on - strand at 767.414 kb on + strand, within Dshi_0757 at 767.422 kb on - strand, within Dshi_0757 at 767.514 kb on - strand, within Dshi_0757 at 767.556 kb on + strand, within Dshi_0757 at 767.556 kb on + strand, within Dshi_0757 at 767.564 kb on - strand, within Dshi_0757 at 767.564 kb on - strand, within Dshi_0757 at 767.575 kb on - strand, within Dshi_0757 at 767.622 kb on + strand, within Dshi_0757 at 767.627 kb on + strand, within Dshi_0757 at 767.630 kb on - strand, within Dshi_0757 at 767.672 kb on - strand, within Dshi_0757 at 767.820 kb on + strand, within Dshi_0757 at 767.868 kb on + strand, within Dshi_0757 at 767.868 kb on + strand, within Dshi_0757 at 767.869 kb on + strand, within Dshi_0757 at 767.869 kb on + strand, within Dshi_0757 at 768.000 kb on - strand, within Dshi_0757 at 768.034 kb on - strand, within Dshi_0757 at 768.044 kb on - strand, within Dshi_0757 at 768.054 kb on - strand, within Dshi_0757 at 768.196 kb on + strand, within Dshi_0757 at 768.219 kb on + strand, within Dshi_0757
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 765,605 + Dshi_0755 0.27 -0.8 765,624 - Dshi_0755 0.29 +0.3 765,653 + Dshi_0755 0.31 +0.0 765,659 - Dshi_0755 0.31 +0.2 765,812 + Dshi_0755 0.43 -0.1 765,890 + Dshi_0755 0.48 -0.1 766,108 - Dshi_0755 0.64 +0.5 766,108 - Dshi_0755 0.64 +0.3 766,219 + Dshi_0755 0.72 +0.1 766,220 - Dshi_0755 0.72 -0.2 766,392 + Dshi_0755 0.85 +0.2 766,430 + Dshi_0755 0.88 +0.2 766,430 + Dshi_0755 0.88 -0.7 766,459 + Dshi_0755 0.90 +0.6 766,690 + Dshi_0756 0.16 -0.4 766,816 + Dshi_0756 0.35 -0.1 767,048 + Dshi_0756 0.70 -0.1 767,069 + Dshi_0756 0.73 -1.1 767,220 + +0.1 767,276 + +0.1 767,280 - +0.5 767,414 + Dshi_0757 0.12 -0.7 767,422 - Dshi_0757 0.12 +0.3 767,514 - Dshi_0757 0.19 -0.7 767,556 + Dshi_0757 0.22 +0.2 767,556 + Dshi_0757 0.22 +0.5 767,564 - Dshi_0757 0.23 +0.2 767,564 - Dshi_0757 0.23 -0.6 767,575 - Dshi_0757 0.23 -0.0 767,622 + Dshi_0757 0.27 -0.2 767,627 + Dshi_0757 0.27 +0.4 767,630 - Dshi_0757 0.27 +0.3 767,672 - Dshi_0757 0.30 -0.0 767,820 + Dshi_0757 0.41 -0.1 767,868 + Dshi_0757 0.44 +0.2 767,868 + Dshi_0757 0.44 +0.1 767,869 + Dshi_0757 0.44 +0.5 767,869 + Dshi_0757 0.44 +0.5 768,000 - Dshi_0757 0.54 -1.3 768,034 - Dshi_0757 0.56 +0.2 768,044 - Dshi_0757 0.57 +0.1 768,054 - Dshi_0757 0.58 +0.3 768,196 + Dshi_0757 0.68 -0.7 768,219 + Dshi_0757 0.69 -0.3
Or see this region's nucleotide sequence