Experiment: Vanillyl Alcohol 0.005 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2892 and Pf6N2E2_2893 overlap by 15 nucleotides Pf6N2E2_2893 and Pf6N2E2_2894 are separated by 29 nucleotides Pf6N2E2_2894 and Pf6N2E2_2895 are separated by 240 nucleotides
Pf6N2E2_2892 - Glucose ABC transport system, periplasmic sugar-binding protein, at 3,380,637 to 3,381,836
_2892
Pf6N2E2_2893 - hypothetical protein, at 3,381,822 to 3,382,025
_2893
Pf6N2E2_2894 - N-acylglucosamine 2-epimerase (EC 5.1.3.8), at 3,382,055 to 3,383,314
_2894
Pf6N2E2_2895 - Integral membrane sensor signal transduction histidine kinase (EC 2.7.13.3), glucose catabolism cluster, at 3,383,555 to 3,385,024
_2895
Position (kb)
3382
3383
3384 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3381.196 kb on + strand, within Pf6N2E2_2892 at 3381.196 kb on + strand, within Pf6N2E2_2892 at 3381.196 kb on + strand, within Pf6N2E2_2892 at 3381.196 kb on + strand, within Pf6N2E2_2892 at 3381.196 kb on + strand, within Pf6N2E2_2892 at 3381.196 kb on + strand, within Pf6N2E2_2892 at 3381.196 kb on + strand, within Pf6N2E2_2892 at 3381.197 kb on - strand, within Pf6N2E2_2892 at 3381.197 kb on - strand, within Pf6N2E2_2892 at 3381.197 kb on - strand, within Pf6N2E2_2892 at 3381.197 kb on - strand, within Pf6N2E2_2892 at 3381.197 kb on - strand, within Pf6N2E2_2892 at 3381.197 kb on - strand, within Pf6N2E2_2892 at 3381.197 kb on - strand, within Pf6N2E2_2892 at 3381.197 kb on - strand, within Pf6N2E2_2892 at 3381.197 kb on - strand, within Pf6N2E2_2892 at 3381.197 kb on - strand, within Pf6N2E2_2892 at 3381.286 kb on + strand, within Pf6N2E2_2892 at 3381.287 kb on - strand, within Pf6N2E2_2892 at 3381.406 kb on + strand, within Pf6N2E2_2892 at 3381.407 kb on - strand, within Pf6N2E2_2892 at 3381.514 kb on + strand, within Pf6N2E2_2892 at 3381.514 kb on + strand, within Pf6N2E2_2892 at 3381.514 kb on + strand, within Pf6N2E2_2892 at 3381.514 kb on + strand, within Pf6N2E2_2892 at 3381.514 kb on + strand, within Pf6N2E2_2892 at 3381.515 kb on - strand, within Pf6N2E2_2892 at 3381.526 kb on + strand, within Pf6N2E2_2892 at 3381.526 kb on + strand, within Pf6N2E2_2892 at 3381.526 kb on + strand, within Pf6N2E2_2892 at 3381.527 kb on - strand, within Pf6N2E2_2892 at 3381.752 kb on + strand at 3381.752 kb on + strand at 3381.752 kb on + strand at 3381.753 kb on - strand at 3381.753 kb on - strand at 3381.769 kb on - strand at 3381.839 kb on + strand at 3381.940 kb on + strand, within Pf6N2E2_2893 at 3381.941 kb on - strand, within Pf6N2E2_2893 at 3381.941 kb on - strand, within Pf6N2E2_2893 at 3381.941 kb on - strand, within Pf6N2E2_2893 at 3381.946 kb on + strand, within Pf6N2E2_2893 at 3381.946 kb on + strand, within Pf6N2E2_2893 at 3381.946 kb on + strand, within Pf6N2E2_2893 at 3381.947 kb on - strand, within Pf6N2E2_2893 at 3381.961 kb on + strand, within Pf6N2E2_2893 at 3381.962 kb on - strand, within Pf6N2E2_2893 at 3381.962 kb on - strand, within Pf6N2E2_2893 at 3381.962 kb on - strand, within Pf6N2E2_2893 at 3381.962 kb on - strand, within Pf6N2E2_2893 at 3381.998 kb on + strand, within Pf6N2E2_2893 at 3381.998 kb on + strand, within Pf6N2E2_2893 at 3381.999 kb on - strand, within Pf6N2E2_2893 at 3382.056 kb on + strand at 3382.057 kb on - strand at 3382.149 kb on + strand at 3382.149 kb on + strand at 3382.149 kb on + strand at 3382.149 kb on + strand at 3382.150 kb on - strand at 3382.150 kb on - strand at 3382.284 kb on + strand, within Pf6N2E2_2894 at 3382.284 kb on + strand, within Pf6N2E2_2894 at 3382.284 kb on + strand, within Pf6N2E2_2894 at 3382.285 kb on - strand, within Pf6N2E2_2894 at 3382.285 kb on - strand, within Pf6N2E2_2894 at 3382.395 kb on + strand, within Pf6N2E2_2894 at 3382.395 kb on + strand, within Pf6N2E2_2894 at 3382.396 kb on - strand, within Pf6N2E2_2894 at 3382.396 kb on - strand, within Pf6N2E2_2894 at 3382.396 kb on - strand, within Pf6N2E2_2894 at 3382.605 kb on + strand, within Pf6N2E2_2894 at 3383.323 kb on - strand at 3383.323 kb on - strand at 3383.353 kb on + strand at 3383.354 kb on - strand at 3383.354 kb on - strand at 3383.354 kb on - strand at 3383.395 kb on + strand at 3383.395 kb on + strand at 3383.395 kb on + strand at 3383.395 kb on + strand at 3383.396 kb on - strand at 3383.396 kb on - strand at 3383.396 kb on - strand at 3383.396 kb on - strand at 3383.415 kb on + strand at 3383.415 kb on + strand at 3383.416 kb on - strand at 3383.416 kb on - strand at 3383.416 kb on - strand at 3383.416 kb on - strand at 3383.483 kb on + strand at 3383.483 kb on + strand at 3383.556 kb on + strand at 3383.852 kb on - strand, within Pf6N2E2_2895 at 3384.162 kb on - strand, within Pf6N2E2_2895 at 3384.162 kb on - strand, within Pf6N2E2_2895 at 3384.162 kb on - strand, within Pf6N2E2_2895
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M remove 3,381,196 + Pf6N2E2_2892 0.47 -0.1 3,381,196 + Pf6N2E2_2892 0.47 +0.6 3,381,196 + Pf6N2E2_2892 0.47 -0.7 3,381,196 + Pf6N2E2_2892 0.47 +0.7 3,381,196 + Pf6N2E2_2892 0.47 +0.6 3,381,196 + Pf6N2E2_2892 0.47 +0.7 3,381,196 + Pf6N2E2_2892 0.47 -0.8 3,381,197 - Pf6N2E2_2892 0.47 -0.7 3,381,197 - Pf6N2E2_2892 0.47 -1.0 3,381,197 - Pf6N2E2_2892 0.47 -0.6 3,381,197 - Pf6N2E2_2892 0.47 +1.0 3,381,197 - Pf6N2E2_2892 0.47 +0.1 3,381,197 - Pf6N2E2_2892 0.47 -1.4 3,381,197 - Pf6N2E2_2892 0.47 +0.5 3,381,197 - Pf6N2E2_2892 0.47 +0.1 3,381,197 - Pf6N2E2_2892 0.47 -0.3 3,381,197 - Pf6N2E2_2892 0.47 -0.1 3,381,286 + Pf6N2E2_2892 0.54 -1.8 3,381,287 - Pf6N2E2_2892 0.54 -1.6 3,381,406 + Pf6N2E2_2892 0.64 +0.4 3,381,407 - Pf6N2E2_2892 0.64 +0.6 3,381,514 + Pf6N2E2_2892 0.73 +0.6 3,381,514 + Pf6N2E2_2892 0.73 -0.1 3,381,514 + Pf6N2E2_2892 0.73 +1.3 3,381,514 + Pf6N2E2_2892 0.73 -2.6 3,381,514 + Pf6N2E2_2892 0.73 +1.6 3,381,515 - Pf6N2E2_2892 0.73 -1.4 3,381,526 + Pf6N2E2_2892 0.74 -0.6 3,381,526 + Pf6N2E2_2892 0.74 -2.8 3,381,526 + Pf6N2E2_2892 0.74 +1.6 3,381,527 - Pf6N2E2_2892 0.74 +0.2 3,381,752 + +1.2 3,381,752 + -0.8 3,381,752 + -1.1 3,381,753 - +0.2 3,381,753 - +1.0 3,381,769 - -0.1 3,381,839 + +0.2 3,381,940 + Pf6N2E2_2893 0.58 +0.8 3,381,941 - Pf6N2E2_2893 0.58 -0.4 3,381,941 - Pf6N2E2_2893 0.58 -0.6 3,381,941 - Pf6N2E2_2893 0.58 +0.5 3,381,946 + Pf6N2E2_2893 0.61 -0.0 3,381,946 + Pf6N2E2_2893 0.61 -0.3 3,381,946 + Pf6N2E2_2893 0.61 -1.4 3,381,947 - Pf6N2E2_2893 0.61 -0.8 3,381,961 + Pf6N2E2_2893 0.68 +0.8 3,381,962 - Pf6N2E2_2893 0.69 +1.2 3,381,962 - Pf6N2E2_2893 0.69 +0.1 3,381,962 - Pf6N2E2_2893 0.69 -2.1 3,381,962 - Pf6N2E2_2893 0.69 -0.6 3,381,998 + Pf6N2E2_2893 0.86 +0.4 3,381,998 + Pf6N2E2_2893 0.86 -0.2 3,381,999 - Pf6N2E2_2893 0.87 +1.4 3,382,056 + +0.7 3,382,057 - +1.2 3,382,149 + +0.1 3,382,149 + -0.8 3,382,149 + +1.5 3,382,149 + -0.5 3,382,150 - -0.3 3,382,150 - -0.4 3,382,284 + Pf6N2E2_2894 0.18 +0.2 3,382,284 + Pf6N2E2_2894 0.18 +1.3 3,382,284 + Pf6N2E2_2894 0.18 +3.2 3,382,285 - Pf6N2E2_2894 0.18 -0.4 3,382,285 - Pf6N2E2_2894 0.18 +0.8 3,382,395 + Pf6N2E2_2894 0.27 -1.9 3,382,395 + Pf6N2E2_2894 0.27 +1.0 3,382,396 - Pf6N2E2_2894 0.27 +0.6 3,382,396 - Pf6N2E2_2894 0.27 +0.6 3,382,396 - Pf6N2E2_2894 0.27 -0.3 3,382,605 + Pf6N2E2_2894 0.44 +1.1 3,383,323 - +0.4 3,383,323 - -0.9 3,383,353 + -0.0 3,383,354 - +1.3 3,383,354 - -0.9 3,383,354 - +0.9 3,383,395 + -1.5 3,383,395 + -0.2 3,383,395 + +1.7 3,383,395 + -0.0 3,383,396 - +0.1 3,383,396 - +1.0 3,383,396 - -0.8 3,383,396 - -0.6 3,383,415 + -0.3 3,383,415 + -0.7 3,383,416 - -1.6 3,383,416 - -1.5 3,383,416 - +0.9 3,383,416 - +0.5 3,383,483 + +0.4 3,383,483 + +0.2 3,383,556 + +1.7 3,383,852 - Pf6N2E2_2895 0.20 -0.1 3,384,162 - Pf6N2E2_2895 0.41 -0.8 3,384,162 - Pf6N2E2_2895 0.41 -2.5 3,384,162 - Pf6N2E2_2895 0.41 -0.2
Or see this region's nucleotide sequence