Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1330

Experiment: Vanillyl Alcohol 0.005 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1329 and Pf6N2E2_1330 are separated by 145 nucleotidesPf6N2E2_1330 and Pf6N2E2_1331 are separated by 17 nucleotides Pf6N2E2_1329 - Phenylacetaldehyde dehydrogenase (EC 1.2.1.39), at 1,563,377 to 1,564,864 _1329 Pf6N2E2_1330 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases, at 1,565,010 to 1,566,467 _1330 Pf6N2E2_1331 - General substrate transporter:Major facilitator superfamily, at 1,566,485 to 1,567,741 _1331 Position (kb) 1565 1566 1567Strain fitness (log2 ratio) -2 -1 0 1 2at 1564.514 kb on + strand, within Pf6N2E2_1329at 1564.514 kb on + strand, within Pf6N2E2_1329at 1564.514 kb on + strand, within Pf6N2E2_1329at 1564.514 kb on + strand, within Pf6N2E2_1329at 1564.514 kb on + strand, within Pf6N2E2_1329at 1564.514 kb on + strand, within Pf6N2E2_1329at 1564.514 kb on + strand, within Pf6N2E2_1329at 1564.515 kb on - strand, within Pf6N2E2_1329at 1564.515 kb on - strand, within Pf6N2E2_1329at 1564.515 kb on - strand, within Pf6N2E2_1329at 1564.605 kb on - strand, within Pf6N2E2_1329at 1564.829 kb on + strandat 1564.829 kb on + strandat 1564.829 kb on + strandat 1565.216 kb on - strand, within Pf6N2E2_1330at 1565.327 kb on - strand, within Pf6N2E2_1330at 1565.327 kb on - strand, within Pf6N2E2_1330at 1565.327 kb on - strand, within Pf6N2E2_1330at 1565.389 kb on + strand, within Pf6N2E2_1330at 1565.497 kb on + strand, within Pf6N2E2_1330at 1565.498 kb on - strand, within Pf6N2E2_1330at 1565.646 kb on - strand, within Pf6N2E2_1330at 1565.646 kb on - strand, within Pf6N2E2_1330at 1565.717 kb on - strand, within Pf6N2E2_1330at 1565.810 kb on + strand, within Pf6N2E2_1330at 1566.462 kb on - strandat 1566.482 kb on - strandat 1566.482 kb on - strandat 1566.669 kb on + strand, within Pf6N2E2_1331at 1566.669 kb on + strand, within Pf6N2E2_1331at 1566.670 kb on - strand, within Pf6N2E2_1331at 1566.670 kb on - strand, within Pf6N2E2_1331at 1566.670 kb on - strand, within Pf6N2E2_1331at 1566.682 kb on + strand, within Pf6N2E2_1331at 1566.808 kb on - strand, within Pf6N2E2_1331at 1566.808 kb on - strand, within Pf6N2E2_1331at 1567.194 kb on + strand, within Pf6N2E2_1331at 1567.195 kb on - strand, within Pf6N2E2_1331at 1567.195 kb on - strand, within Pf6N2E2_1331at 1567.323 kb on + strand, within Pf6N2E2_1331at 1567.324 kb on - strand, within Pf6N2E2_1331at 1567.447 kb on - strand, within Pf6N2E2_1331

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillyl Alcohol 0.005 M
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1,564,514 + Pf6N2E2_1329 0.76 +0.7
1,564,514 + Pf6N2E2_1329 0.76 +0.1
1,564,514 + Pf6N2E2_1329 0.76 -0.8
1,564,514 + Pf6N2E2_1329 0.76 +0.4
1,564,514 + Pf6N2E2_1329 0.76 +1.5
1,564,514 + Pf6N2E2_1329 0.76 -2.5
1,564,514 + Pf6N2E2_1329 0.76 +0.0
1,564,515 - Pf6N2E2_1329 0.76 +1.0
1,564,515 - Pf6N2E2_1329 0.76 -0.5
1,564,515 - Pf6N2E2_1329 0.76 +0.5
1,564,605 - Pf6N2E2_1329 0.83 -0.5
1,564,829 + -0.1
1,564,829 + -0.5
1,564,829 + -2.6
1,565,216 - Pf6N2E2_1330 0.14 -0.2
1,565,327 - Pf6N2E2_1330 0.22 +0.0
1,565,327 - Pf6N2E2_1330 0.22 +0.1
1,565,327 - Pf6N2E2_1330 0.22 +1.5
1,565,389 + Pf6N2E2_1330 0.26 +1.8
1,565,497 + Pf6N2E2_1330 0.33 -1.6
1,565,498 - Pf6N2E2_1330 0.33 +1.2
1,565,646 - Pf6N2E2_1330 0.44 +0.2
1,565,646 - Pf6N2E2_1330 0.44 -0.5
1,565,717 - Pf6N2E2_1330 0.48 +1.3
1,565,810 + Pf6N2E2_1330 0.55 +0.4
1,566,462 - -1.8
1,566,482 - +0.3
1,566,482 - +0.4
1,566,669 + Pf6N2E2_1331 0.15 +0.2
1,566,669 + Pf6N2E2_1331 0.15 -0.5
1,566,670 - Pf6N2E2_1331 0.15 +0.2
1,566,670 - Pf6N2E2_1331 0.15 +1.2
1,566,670 - Pf6N2E2_1331 0.15 +0.4
1,566,682 + Pf6N2E2_1331 0.16 +1.2
1,566,808 - Pf6N2E2_1331 0.26 +0.5
1,566,808 - Pf6N2E2_1331 0.26 -0.5
1,567,194 + Pf6N2E2_1331 0.56 -1.9
1,567,195 - Pf6N2E2_1331 0.56 -1.9
1,567,195 - Pf6N2E2_1331 0.56 -1.8
1,567,323 + Pf6N2E2_1331 0.67 -1.1
1,567,324 - Pf6N2E2_1331 0.67 +0.8
1,567,447 - Pf6N2E2_1331 0.77 +1.8

Or see this region's nucleotide sequence