Experiment: Urea (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08290 and PS417_08295 are separated by 64 nucleotides PS417_08295 and PS417_08300 are separated by 146 nucleotides
PS417_08290: PS417_08290 - potassium-transporting ATPase subunit B, at 1,814,422 to 1,816,479
_08290
PS417_08295: PS417_08295 - ATPase, at 1,816,544 to 1,817,089
_08295
PS417_08300: PS417_08300 - histidine kinase, at 1,817,236 to 1,819,887
_08300
Position (kb)
1816
1817
1818 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1815.593 kb on - strand, within PS417_08290 at 1816.189 kb on + strand, within PS417_08290 at 1816.190 kb on - strand, within PS417_08290 at 1816.225 kb on + strand, within PS417_08290 at 1816.454 kb on + strand at 1816.454 kb on + strand at 1816.454 kb on + strand at 1816.795 kb on + strand, within PS417_08295 at 1816.898 kb on - strand, within PS417_08295 at 1817.128 kb on - strand at 1817.128 kb on - strand at 1817.139 kb on + strand at 1817.139 kb on + strand at 1817.139 kb on + strand at 1817.140 kb on - strand at 1817.140 kb on - strand at 1817.140 kb on - strand at 1817.140 kb on - strand at 1817.146 kb on + strand at 1817.153 kb on - strand at 1817.208 kb on - strand at 1817.215 kb on + strand at 1817.307 kb on - strand at 1817.341 kb on + strand at 1817.450 kb on + strand at 1817.639 kb on + strand, within PS417_08300 at 1817.639 kb on + strand, within PS417_08300 at 1817.640 kb on - strand, within PS417_08300 at 1817.816 kb on - strand, within PS417_08300 at 1817.816 kb on - strand, within PS417_08300
Per-strain Table
Position Strand Gene LocusTag Fraction Urea (N) remove 1,815,593 - PS417_08290 0.57 -1.5 1,816,189 + PS417_08290 0.86 -0.7 1,816,190 - PS417_08290 0.86 -0.3 1,816,225 + PS417_08290 0.88 +0.2 1,816,454 + -1.3 1,816,454 + +0.0 1,816,454 + -0.7 1,816,795 + PS417_08295 0.46 -0.3 1,816,898 - PS417_08295 0.65 -0.4 1,817,128 - -1.3 1,817,128 - -1.8 1,817,139 + -0.8 1,817,139 + +2.3 1,817,139 + +0.6 1,817,140 - +0.3 1,817,140 - -0.7 1,817,140 - -0.6 1,817,140 - -0.0 1,817,146 + +0.4 1,817,153 - +1.0 1,817,208 - +0.2 1,817,215 + -0.1 1,817,307 - +1.2 1,817,341 + -0.2 1,817,450 + +1.0 1,817,639 + PS417_08300 0.15 -0.6 1,817,639 + PS417_08300 0.15 +0.0 1,817,640 - PS417_08300 0.15 +0.0 1,817,816 - PS417_08300 0.22 -1.9 1,817,816 - PS417_08300 0.22 -0.1
Or see this region's nucleotide sequence