Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_5772

Experiment: nitrate 0.125 M

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrate 0.125 M
6,588,230	+				-0.3
6,588,231	-				-1.6
6,588,261	-		Pf6N2E2_5771	0.11	+0.5
6,588,540	+		Pf6N2E2_5771	0.50	+0.1
6,588,565	+		Pf6N2E2_5771	0.53	+0.5
6,588,614	+		Pf6N2E2_5771	0.60	+0.5
6,588,614	+		Pf6N2E2_5771	0.60	-0.8
6,588,628	+		Pf6N2E2_5771	0.62	+0.9
6,588,628	+				+2.9
6,588,629	-		Pf6N2E2_5771	0.62	+0.1
6,588,760	+		Pf6N2E2_5771	0.81	-0.6
6,588,760	+		Pf6N2E2_5771	0.81	-0.3
6,588,760	+		Pf6N2E2_5771	0.81	+0.7
6,588,760	+		Pf6N2E2_5771	0.81	+0.3
6,588,760	+		Pf6N2E2_5771	0.81	-1.4
6,588,760	+		Pf6N2E2_5771	0.81	-0.5
6,588,761	-		Pf6N2E2_5771	0.81	-1.3
6,588,761	-		Pf6N2E2_5771	0.81	-1.7
6,588,769	+		Pf6N2E2_5771	0.82	-0.8
6,588,769	+		Pf6N2E2_5771	0.82	+0.2
6,588,769	+		Pf6N2E2_5771	0.82	-0.1
6,588,769	+		Pf6N2E2_5771	0.82	-0.1
6,588,769	+		Pf6N2E2_5771	0.82	+0.5
6,588,769	+		Pf6N2E2_5771	0.82	+0.1
6,588,895	+				-0.1
6,588,895	+				-0.4
6,588,896	-				-0.3
6,588,896	-				+1.1
6,588,896	-				-0.3
6,588,908	+				-1.1
6,588,908	+				+0.5
6,588,908	+				+0.1
6,588,909	-				-0.4
6,588,909	-				-1.3
6,588,909	-				+0.9
6,588,909	-				-1.3
6,588,909	-				-0.8
6,588,995	-				+0.1
6,588,995	-				-1.1
6,588,995	-				-1.5
6,588,995	-				+1.2
6,588,995	-				-0.0
6,588,996	+				-0.4
6,588,996	+				+0.3
6,588,996	+				+0.6
6,588,996	+				+1.7
6,588,996	+				+0.6
6,588,997	-				-1.5
6,588,997	-				+0.3
6,588,997	-				+0.1
6,588,997	-				-0.5
6,589,003	-				-0.7
6,589,003	-				-1.4
6,589,003	-				+0.3
6,589,003	-				+1.0
6,589,003	-				+1.4
6,589,009	+				-0.3
6,589,010	-				+0.6
6,589,023	+				-1.9
6,589,054	+				-1.4
6,589,067	+				-0.2
6,589,104	+				+0.9
6,589,151	+				-0.4
6,589,363	+		Pf6N2E2_5772	0.38	+1.2
6,589,429	+		Pf6N2E2_5772	0.52	+1.0
6,589,429	+		Pf6N2E2_5772	0.52	+1.2
6,589,429	+		Pf6N2E2_5772	0.52	+0.6
6,589,430	-		Pf6N2E2_5772	0.52	-0.3
6,589,430	-		Pf6N2E2_5772	0.52	+0.6
6,589,461	+		Pf6N2E2_5772	0.59	+1.9
6,589,461	+		Pf6N2E2_5772	0.59	-0.2
6,589,462	-		Pf6N2E2_5772	0.59	+2.2
6,589,700	+				-0.1
6,589,700	-				-0.2
6,589,701	-				-1.1
6,589,701	-				-0.8
6,589,706	+				+0.6
6,589,714	+				+0.8
6,589,715	-				-0.3
6,589,735	+				+1.0
6,589,757	+				+1.0
6,589,932	-		Pf6N2E2_5773	0.53	-0.5
6,589,985	+		Pf6N2E2_5773	0.67	+0.1
6,589,985	+		Pf6N2E2_5773	0.67	+0.2
6,589,985	+		Pf6N2E2_5773	0.67	+2.2
6,589,986	-		Pf6N2E2_5773	0.68	+0.1
6,589,986	-		Pf6N2E2_5773	0.68	-0.0
6,589,986	-		Pf6N2E2_5773	0.68	+1.9
6,590,002	+		Pf6N2E2_5773	0.72	+0.9
6,590,002	+		Pf6N2E2_5773	0.72	+0.1
6,590,003	-		Pf6N2E2_5773	0.72	-1.8
6,590,107	+				-1.3
6,590,107	+				+0.4
6,590,107	+				-0.4
6,590,108	-				+0.0
6,590,176	+		Pf6N2E2_5774	0.20	+0.9
6,590,176	+		Pf6N2E2_5774	0.20	+0.5
6,590,176	+		Pf6N2E2_5774	0.20	-1.3
6,590,176	+		Pf6N2E2_5774	0.20	+0.7
6,590,177	-		Pf6N2E2_5774	0.21	+0.2
6,590,177	-		Pf6N2E2_5774	0.21	+0.4
6,590,177	-		Pf6N2E2_5774	0.21	+0.0
6,590,184	+		Pf6N2E2_5774	0.23	-0.5
6,590,185	-		Pf6N2E2_5774	0.23	-1.3
6,590,356	+		Pf6N2E2_5774	0.69	-0.5
6,590,356	+		Pf6N2E2_5774	0.69	-0.3
6,590,357	-		Pf6N2E2_5774	0.69	-1.1
6,590,357	-		Pf6N2E2_5774	0.69	+0.7
6,590,442	+				+0.2
6,590,443	-				-0.5
6,590,443	-				-0.1
6,590,443	-				+0.1
6,590,625	+		Pf6N2E2_5775	0.38	+1.1
6,590,625	+		Pf6N2E2_5775	0.38	+0.1
6,590,626	-		Pf6N2E2_5775	0.38	+1.9
6,590,626	-		Pf6N2E2_5775	0.38	-0.1
6,590,626	-		Pf6N2E2_5775	0.38	+0.3
6,590,634	-		Pf6N2E2_5775	0.40	-0.7
6,590,634	-		Pf6N2E2_5775	0.40	+0.1