Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_19060

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_19055 and AO356_19060 are separated by 101 nucleotidesAO356_19060 and AO356_19065 are separated by 160 nucleotides AO356_19055: AO356_19055 - 23S rRNA methyltransferase, at 4,281,844 to 4,283,214 _19055 AO356_19060: AO356_19060 - (p)ppGpp synthetase, at 4,283,316 to 4,285,562 _19060 AO356_19065: AO356_19065 - nucleoside triphosphate hydrolase, at 4,285,723 to 4,286,556 _19065 Position (kb) 4283 4284 4285 4286Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4282.392 kb on - strand, within AO356_19055at 4282.392 kb on - strand, within AO356_19055at 4282.580 kb on + strand, within AO356_19055at 4282.580 kb on + strand, within AO356_19055at 4282.581 kb on - strand, within AO356_19055at 4282.670 kb on - strand, within AO356_19055at 4282.926 kb on - strand, within AO356_19055at 4282.976 kb on + strand, within AO356_19055at 4283.053 kb on + strand, within AO356_19055at 4283.053 kb on + strand, within AO356_19055at 4283.053 kb on + strand, within AO356_19055at 4283.054 kb on - strand, within AO356_19055at 4283.054 kb on - strand, within AO356_19055at 4283.088 kb on + strandat 4283.120 kb on + strandat 4283.142 kb on + strandat 4283.142 kb on + strandat 4283.142 kb on + strandat 4283.142 kb on + strandat 4283.143 kb on - strandat 4283.180 kb on + strandat 4283.181 kb on - strandat 4283.307 kb on + strandat 4283.307 kb on + strandat 4283.307 kb on + strandat 4283.307 kb on + strandat 4283.307 kb on + strandat 4283.307 kb on + strandat 4283.308 kb on - strandat 4283.308 kb on - strandat 4283.308 kb on - strandat 4283.311 kb on + strandat 4283.311 kb on + strandat 4283.311 kb on + strandat 4283.311 kb on + strandat 4283.312 kb on - strandat 4283.312 kb on - strandat 4283.312 kb on - strandat 4283.312 kb on - strandat 4283.320 kb on + strandat 4283.320 kb on + strandat 4283.320 kb on + strandat 4283.320 kb on + strandat 4283.321 kb on - strandat 4283.361 kb on - strandat 4283.361 kb on - strandat 4283.361 kb on - strandat 4283.586 kb on + strand, within AO356_19060at 4283.687 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.892 kb on + strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.893 kb on - strand, within AO356_19060at 4283.979 kb on + strand, within AO356_19060at 4283.979 kb on + strand, within AO356_19060at 4283.979 kb on + strand, within AO356_19060at 4283.980 kb on - strand, within AO356_19060at 4283.980 kb on - strand, within AO356_19060at 4283.980 kb on - strand, within AO356_19060at 4283.980 kb on - strand, within AO356_19060at 4283.980 kb on - strand, within AO356_19060at 4283.980 kb on - strand, within AO356_19060at 4284.117 kb on + strand, within AO356_19060at 4284.117 kb on + strand, within AO356_19060at 4284.117 kb on + strand, within AO356_19060at 4284.117 kb on + strand, within AO356_19060at 4284.118 kb on - strand, within AO356_19060at 4284.118 kb on - strand, within AO356_19060at 4284.168 kb on + strand, within AO356_19060at 4284.169 kb on - strand, within AO356_19060at 4284.169 kb on - strand, within AO356_19060at 4284.169 kb on - strand, within AO356_19060at 4284.169 kb on - strand, within AO356_19060at 4284.216 kb on + strand, within AO356_19060at 4284.216 kb on + strand, within AO356_19060at 4284.216 kb on + strand, within AO356_19060at 4284.217 kb on - strand, within AO356_19060at 4284.217 kb on - strand, within AO356_19060at 4284.276 kb on + strand, within AO356_19060at 4284.277 kb on - strand, within AO356_19060at 4284.277 kb on - strand, within AO356_19060at 4284.277 kb on - strand, within AO356_19060at 4284.277 kb on - strand, within AO356_19060at 4284.417 kb on + strand, within AO356_19060at 4284.417 kb on + strand, within AO356_19060at 4284.417 kb on + strand, within AO356_19060at 4284.418 kb on - strand, within AO356_19060at 4284.418 kb on - strand, within AO356_19060at 4284.418 kb on - strand, within AO356_19060at 4284.418 kb on - strand, within AO356_19060at 4284.453 kb on + strand, within AO356_19060at 4284.454 kb on - strand, within AO356_19060at 4284.564 kb on + strand, within AO356_19060at 4284.564 kb on + strand, within AO356_19060at 4284.564 kb on + strand, within AO356_19060at 4284.564 kb on + strand, within AO356_19060at 4284.564 kb on + strand, within AO356_19060at 4284.565 kb on - strand, within AO356_19060at 4284.565 kb on - strand, within AO356_19060at 4284.565 kb on - strand, within AO356_19060at 4284.565 kb on - strand, within AO356_19060at 4284.566 kb on + strand, within AO356_19060at 4284.566 kb on + strand, within AO356_19060at 4284.566 kb on + strand, within AO356_19060at 4284.566 kb on + strand, within AO356_19060at 4284.566 kb on + strand, within AO356_19060at 4284.567 kb on - strand, within AO356_19060at 4284.567 kb on - strand, within AO356_19060at 4284.567 kb on - strand, within AO356_19060at 4284.567 kb on - strand, within AO356_19060at 4284.567 kb on - strand, within AO356_19060at 4284.567 kb on - strand, within AO356_19060at 4284.702 kb on + strand, within AO356_19060at 4284.702 kb on + strand, within AO356_19060at 4284.702 kb on + strand, within AO356_19060at 4284.703 kb on - strand, within AO356_19060at 4284.703 kb on - strand, within AO356_19060at 4284.789 kb on + strand, within AO356_19060at 4284.789 kb on + strand, within AO356_19060at 4284.789 kb on + strand, within AO356_19060at 4284.789 kb on + strand, within AO356_19060at 4284.789 kb on + strand, within AO356_19060at 4284.790 kb on - strand, within AO356_19060at 4285.089 kb on + strand, within AO356_19060at 4285.089 kb on + strand, within AO356_19060at 4285.194 kb on + strand, within AO356_19060at 4285.194 kb on + strand, within AO356_19060at 4285.195 kb on - strand, within AO356_19060at 4285.344 kb on + strandat 4285.345 kb on - strandat 4285.345 kb on - strandat 4285.544 kb on + strandat 4285.545 kb on - strandat 4285.726 kb on + strandat 4285.727 kb on - strandat 4285.727 kb on - strandat 4285.727 kb on - strandat 4285.727 kb on - strandat 4285.727 kb on - strandat 4285.727 kb on - strandat 4285.827 kb on + strand, within AO356_19065at 4285.827 kb on + strand, within AO356_19065at 4285.844 kb on - strand, within AO356_19065at 4285.844 kb on - strand, within AO356_19065at 4285.844 kb on - strand, within AO356_19065at 4285.924 kb on + strand, within AO356_19065at 4285.924 kb on + strand, within AO356_19065at 4285.924 kb on + strand, within AO356_19065at 4285.924 kb on + strand, within AO356_19065at 4285.924 kb on + strand, within AO356_19065at 4285.924 kb on + strand, within AO356_19065at 4285.924 kb on + strand, within AO356_19065at 4285.925 kb on - strand, within AO356_19065at 4285.925 kb on - strand, within AO356_19065at 4285.925 kb on - strand, within AO356_19065at 4285.925 kb on - strand, within AO356_19065at 4285.925 kb on - strand, within AO356_19065at 4285.925 kb on - strand, within AO356_19065at 4285.925 kb on - strand, within AO356_19065at 4285.927 kb on + strand, within AO356_19065at 4285.927 kb on + strand, within AO356_19065at 4285.927 kb on + strand, within AO356_19065at 4285.927 kb on + strand, within AO356_19065at 4285.928 kb on - strand, within AO356_19065at 4285.928 kb on - strand, within AO356_19065at 4286.026 kb on - strand, within AO356_19065at 4286.026 kb on - strand, within AO356_19065at 4286.038 kb on + strand, within AO356_19065at 4286.038 kb on + strand, within AO356_19065at 4286.038 kb on + strand, within AO356_19065at 4286.039 kb on - strand, within AO356_19065at 4286.039 kb on - strand, within AO356_19065

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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4,282,392 - AO356_19055 0.40 +0.1
4,282,392 - AO356_19055 0.40 +0.1
4,282,580 + AO356_19055 0.54 -0.0
4,282,580 + AO356_19055 0.54 -0.1
4,282,581 - AO356_19055 0.54 -0.4
4,282,670 - AO356_19055 0.60 +0.8
4,282,926 - AO356_19055 0.79 +0.0
4,282,976 + AO356_19055 0.83 -0.0
4,283,053 + AO356_19055 0.88 +1.0
4,283,053 + AO356_19055 0.88 -0.7
4,283,053 + AO356_19055 0.88 +0.8
4,283,054 - AO356_19055 0.88 -1.0
4,283,054 - AO356_19055 0.88 -1.1
4,283,088 + +0.9
4,283,120 + -0.5
4,283,142 + +0.6
4,283,142 + -0.0
4,283,142 + +1.0
4,283,142 + +1.2
4,283,143 - -1.0
4,283,180 + +1.0
4,283,181 - -1.5
4,283,307 + +0.1
4,283,307 + -1.4
4,283,307 + -0.7
4,283,307 + -0.0
4,283,307 + -0.5
4,283,307 + -0.8
4,283,308 - +0.0
4,283,308 - -2.0
4,283,308 - -2.0
4,283,311 + -0.8
4,283,311 + -1.0
4,283,311 + +0.0
4,283,311 + -0.1
4,283,312 - -1.9
4,283,312 - -1.0
4,283,312 - +1.3
4,283,312 - -1.4
4,283,320 + -0.6
4,283,320 + -2.0
4,283,320 + -1.8
4,283,320 + -1.0
4,283,321 - -2.5
4,283,361 - -0.7
4,283,361 - -0.7
4,283,361 - -3.2
4,283,586 + AO356_19060 0.12 -1.4
4,283,687 + AO356_19060 0.17 -1.0
4,283,892 + AO356_19060 0.26 -0.5
4,283,892 + AO356_19060 0.26 -1.5
4,283,892 + AO356_19060 0.26 -3.0
4,283,892 + AO356_19060 0.26 -0.5
4,283,892 + AO356_19060 0.26 -2.4
4,283,892 + AO356_19060 0.26 -0.2
4,283,892 + AO356_19060 0.26 -2.8
4,283,892 + AO356_19060 0.26 -1.8
4,283,892 + AO356_19060 0.26 -0.5
4,283,892 + AO356_19060 0.26 -2.8
4,283,892 + AO356_19060 0.26 -1.1
4,283,892 + AO356_19060 0.26 -0.5
4,283,892 + AO356_19060 0.26 -0.5
4,283,892 + AO356_19060 0.26 +0.0
4,283,893 - AO356_19060 0.26 -0.1
4,283,893 - AO356_19060 0.26 -3.1
4,283,893 - AO356_19060 0.26 -1.5
4,283,893 - AO356_19060 0.26 -0.5
4,283,893 - AO356_19060 0.26 -0.2
4,283,893 - AO356_19060 0.26 -1.0
4,283,893 - AO356_19060 0.26 +0.6
4,283,893 - AO356_19060 0.26 -1.4
4,283,893 - AO356_19060 0.26 -2.0
4,283,893 - AO356_19060 0.26 -1.5
4,283,893 - AO356_19060 0.26 -1.4
4,283,893 - AO356_19060 0.26 -1.5
4,283,893 - AO356_19060 0.26 +1.3
4,283,893 - AO356_19060 0.26 -1.0
4,283,893 - AO356_19060 0.26 -1.1
4,283,893 - AO356_19060 0.26 -0.4
4,283,893 - AO356_19060 0.26 -1.7
4,283,893 - AO356_19060 0.26 -1.3
4,283,979 + AO356_19060 0.30 +0.6
4,283,979 + AO356_19060 0.30 -1.0
4,283,979 + AO356_19060 0.30 +0.5
4,283,980 - AO356_19060 0.30 -0.4
4,283,980 - AO356_19060 0.30 -1.1
4,283,980 - AO356_19060 0.30 -1.7
4,283,980 - AO356_19060 0.30 +1.6
4,283,980 - AO356_19060 0.30 -1.6
4,283,980 - AO356_19060 0.30 -1.7
4,284,117 + AO356_19060 0.36 -3.3
4,284,117 + AO356_19060 0.36 -2.0
4,284,117 + AO356_19060 0.36 -1.5
4,284,117 + AO356_19060 0.36 -3.1
4,284,118 - AO356_19060 0.36 +0.6
4,284,118 - AO356_19060 0.36 -1.5
4,284,168 + AO356_19060 0.38 -1.8
4,284,169 - AO356_19060 0.38 -1.2
4,284,169 - AO356_19060 0.38 -2.1
4,284,169 - AO356_19060 0.38 -2.9
4,284,169 - AO356_19060 0.38 -2.1
4,284,216 + AO356_19060 0.40 -0.5
4,284,216 + AO356_19060 0.40 +0.0
4,284,216 + AO356_19060 0.40 -2.3
4,284,217 - AO356_19060 0.40 -1.6
4,284,217 - AO356_19060 0.40 -1.2
4,284,276 + AO356_19060 0.43 -1.9
4,284,277 - AO356_19060 0.43 -2.6
4,284,277 - AO356_19060 0.43 -0.6
4,284,277 - AO356_19060 0.43 +0.3
4,284,277 - AO356_19060 0.43 -0.2
4,284,417 + AO356_19060 0.49 -0.9
4,284,417 + AO356_19060 0.49 -0.7
4,284,417 + AO356_19060 0.49 -1.2
4,284,418 - AO356_19060 0.49 -1.2
4,284,418 - AO356_19060 0.49 -2.6
4,284,418 - AO356_19060 0.49 -2.6
4,284,418 - AO356_19060 0.49 -3.8
4,284,453 + AO356_19060 0.51 -1.7
4,284,454 - AO356_19060 0.51 -0.8
4,284,564 + AO356_19060 0.56 -0.7
4,284,564 + AO356_19060 0.56 -1.2
4,284,564 + AO356_19060 0.56 -0.5
4,284,564 + AO356_19060 0.56 -1.0
4,284,564 + AO356_19060 0.56 -1.4
4,284,565 - AO356_19060 0.56 -1.1
4,284,565 - AO356_19060 0.56 -0.7
4,284,565 - AO356_19060 0.56 -1.0
4,284,565 - AO356_19060 0.56 -0.8
4,284,566 + AO356_19060 0.56 -2.0
4,284,566 + AO356_19060 0.56 +0.3
4,284,566 + AO356_19060 0.56 -2.4
4,284,566 + AO356_19060 0.56 -0.4
4,284,566 + AO356_19060 0.56 -3.0
4,284,567 - AO356_19060 0.56 -2.6
4,284,567 - AO356_19060 0.56 -2.2
4,284,567 - AO356_19060 0.56 -1.2
4,284,567 - AO356_19060 0.56 +0.0
4,284,567 - AO356_19060 0.56 -0.7
4,284,567 - AO356_19060 0.56 -1.3
4,284,702 + AO356_19060 0.62 -2.4
4,284,702 + AO356_19060 0.62 -0.6
4,284,702 + AO356_19060 0.62 -2.2
4,284,703 - AO356_19060 0.62 +0.6
4,284,703 - AO356_19060 0.62 -2.0
4,284,789 + AO356_19060 0.66 -1.8
4,284,789 + AO356_19060 0.66 -0.6
4,284,789 + AO356_19060 0.66 -0.6
4,284,789 + AO356_19060 0.66 -2.3
4,284,789 + AO356_19060 0.66 -3.1
4,284,790 - AO356_19060 0.66 +0.3
4,285,089 + AO356_19060 0.79 -0.2
4,285,089 + AO356_19060 0.79 +0.1
4,285,194 + AO356_19060 0.84 -1.2
4,285,194 + AO356_19060 0.84 +0.6
4,285,195 - AO356_19060 0.84 -1.1
4,285,344 + +0.9
4,285,345 - +0.2
4,285,345 - -0.2
4,285,544 + +0.4
4,285,545 - +0.1
4,285,726 + +1.0
4,285,727 - -0.2
4,285,727 - -1.7
4,285,727 - +0.1
4,285,727 - -0.3
4,285,727 - +0.6
4,285,727 - +1.0
4,285,827 + AO356_19065 0.12 +0.4
4,285,827 + AO356_19065 0.12 -0.0
4,285,844 - AO356_19065 0.15 +0.1
4,285,844 - AO356_19065 0.15 +0.6
4,285,844 - AO356_19065 0.15 +0.7
4,285,924 + AO356_19065 0.24 +0.8
4,285,924 + AO356_19065 0.24 +0.2
4,285,924 + AO356_19065 0.24 -0.4
4,285,924 + AO356_19065 0.24 -0.5
4,285,924 + AO356_19065 0.24 -1.0
4,285,924 + AO356_19065 0.24 +0.9
4,285,924 + AO356_19065 0.24 -0.4
4,285,925 - AO356_19065 0.24 -2.1
4,285,925 - AO356_19065 0.24 +0.6
4,285,925 - AO356_19065 0.24 +0.7
4,285,925 - AO356_19065 0.24 +0.5
4,285,925 - AO356_19065 0.24 +0.3
4,285,925 - AO356_19065 0.24 +0.4
4,285,925 - AO356_19065 0.24 -0.3
4,285,927 + AO356_19065 0.24 -0.1
4,285,927 + AO356_19065 0.24 -0.1
4,285,927 + AO356_19065 0.24 -0.2
4,285,927 + AO356_19065 0.24 +0.1
4,285,928 - AO356_19065 0.25 +0.4
4,285,928 - AO356_19065 0.25 -0.4
4,286,026 - AO356_19065 0.36 -0.4
4,286,026 - AO356_19065 0.36 +0.8
4,286,038 + AO356_19065 0.38 -0.3
4,286,038 + AO356_19065 0.38 -1.0
4,286,038 + AO356_19065 0.38 -0.2
4,286,039 - AO356_19065 0.38 -1.2
4,286,039 - AO356_19065 0.38 -0.2

Or see this region's nucleotide sequence