Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_08480

Experiment: L-Leucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_08475 and AO356_08480 are separated by 848 nucleotidesAO356_08480 and AO356_08485 overlap by 4 nucleotidesAO356_08485 and AO356_08490 overlap by 4 nucleotides AO356_08475: AO356_08475 - hypothetical protein, at 1,905,335 to 1,906,099 _08475 AO356_08480: AO356_08480 - ABC transporter ATP-binding protein, at 1,906,948 to 1,907,664 _08480 AO356_08485: AO356_08485 - ABC transporter ATP-binding protein, at 1,907,661 to 1,908,533 _08485 AO356_08490: AO356_08490 - branched-chain amino acid ABC transporter permease, at 1,908,530 to 1,909,810 _08490 Position (kb) 1906 1907 1908Strain fitness (log2 ratio) -3 -2 -1 0 1at 1906.081 kb on + strandat 1906.081 kb on + strandat 1906.216 kb on - strandat 1906.276 kb on + strandat 1906.298 kb on - strandat 1906.415 kb on - strandat 1906.484 kb on + strandat 1906.542 kb on + strandat 1906.542 kb on + strandat 1906.543 kb on - strandat 1906.543 kb on - strandat 1906.543 kb on - strandat 1906.543 kb on - strandat 1906.622 kb on + strandat 1906.622 kb on + strandat 1906.623 kb on - strandat 1906.623 kb on - strandat 1906.624 kb on + strandat 1906.624 kb on + strandat 1906.642 kb on - strandat 1906.724 kb on - strandat 1906.724 kb on - strandat 1906.724 kb on - strandat 1906.724 kb on - strandat 1906.724 kb on - strandat 1906.724 kb on - strandat 1906.899 kb on + strandat 1906.935 kb on + strandat 1906.935 kb on + strandat 1906.935 kb on + strandat 1906.935 kb on + strandat 1906.965 kb on - strandat 1907.042 kb on + strand, within AO356_08480at 1907.042 kb on + strand, within AO356_08480at 1907.042 kb on + strand, within AO356_08480at 1907.042 kb on + strand, within AO356_08480at 1907.042 kb on + strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.043 kb on - strand, within AO356_08480at 1907.330 kb on + strand, within AO356_08480at 1907.330 kb on + strand, within AO356_08480at 1907.438 kb on + strand, within AO356_08480at 1907.438 kb on + strand, within AO356_08480at 1907.438 kb on + strand, within AO356_08480at 1907.438 kb on + strand, within AO356_08480at 1907.438 kb on + strand, within AO356_08480at 1907.438 kb on + strand, within AO356_08480at 1907.438 kb on + strand, within AO356_08480at 1907.438 kb on + strand, within AO356_08480at 1907.438 kb on + strand, within AO356_08480at 1907.439 kb on - strand, within AO356_08480at 1907.439 kb on - strand, within AO356_08480at 1907.439 kb on - strand, within AO356_08480at 1907.439 kb on - strand, within AO356_08480at 1907.439 kb on - strand, within AO356_08480at 1907.439 kb on - strand, within AO356_08480at 1907.474 kb on + strand, within AO356_08480at 1907.474 kb on + strand, within AO356_08480at 1907.475 kb on - strand, within AO356_08480at 1907.475 kb on - strand, within AO356_08480at 1907.475 kb on - strand, within AO356_08480at 1907.475 kb on - strand, within AO356_08480at 1907.475 kb on - strand, within AO356_08480at 1907.621 kb on + strandat 1907.621 kb on + strandat 1907.622 kb on - strandat 1907.652 kb on + strandat 1907.652 kb on + strandat 1907.653 kb on - strandat 1907.653 kb on - strandat 1907.664 kb on + strandat 1907.664 kb on + strandat 1907.664 kb on + strandat 1907.664 kb on + strandat 1907.664 kb on + strandat 1907.664 kb on + strandat 1907.664 kb on + strandat 1907.665 kb on - strandat 1907.665 kb on - strandat 1907.665 kb on - strandat 1907.665 kb on - strandat 1907.692 kb on + strandat 1907.692 kb on + strandat 1907.793 kb on + strand, within AO356_08485at 1907.793 kb on + strand, within AO356_08485at 1907.793 kb on + strand, within AO356_08485at 1907.793 kb on + strand, within AO356_08485at 1907.793 kb on + strand, within AO356_08485at 1907.978 kb on - strand, within AO356_08485at 1908.037 kb on + strand, within AO356_08485at 1908.038 kb on - strand, within AO356_08485at 1908.191 kb on + strand, within AO356_08485at 1908.192 kb on - strand, within AO356_08485at 1908.241 kb on + strand, within AO356_08485at 1908.241 kb on + strand, within AO356_08485at 1908.241 kb on + strand, within AO356_08485at 1908.242 kb on - strand, within AO356_08485at 1908.242 kb on - strand, within AO356_08485at 1908.242 kb on - strand, within AO356_08485at 1908.242 kb on - strand, within AO356_08485at 1908.244 kb on + strand, within AO356_08485at 1908.244 kb on + strand, within AO356_08485at 1908.244 kb on + strand, within AO356_08485at 1908.245 kb on - strand, within AO356_08485at 1908.245 kb on - strand, within AO356_08485at 1908.245 kb on - strand, within AO356_08485at 1908.370 kb on + strand, within AO356_08485at 1908.370 kb on + strand, within AO356_08485at 1908.370 kb on + strand, within AO356_08485at 1908.371 kb on - strand, within AO356_08485at 1908.371 kb on - strand, within AO356_08485at 1908.520 kb on - strandat 1908.574 kb on + strandat 1908.643 kb on - strandat 1908.643 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Leucine (N)
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1,906,081 + +0.6
1,906,081 + +0.2
1,906,216 - +0.3
1,906,276 + +0.0
1,906,298 - -0.2
1,906,415 - +0.8
1,906,484 + +0.2
1,906,542 + +0.4
1,906,542 + -0.4
1,906,543 - -0.0
1,906,543 - +0.0
1,906,543 - +0.2
1,906,543 - +0.0
1,906,622 + -0.2
1,906,622 + +0.3
1,906,623 - -0.6
1,906,623 - -0.5
1,906,624 + -0.0
1,906,624 + +0.3
1,906,642 - -0.7
1,906,724 - +0.7
1,906,724 - +0.1
1,906,724 - +0.2
1,906,724 - -0.7
1,906,724 - +0.3
1,906,724 - +0.1
1,906,899 + +0.2
1,906,935 + +0.4
1,906,935 + -1.4
1,906,935 + +0.5
1,906,935 + -0.2
1,906,965 - -3.3
1,907,042 + AO356_08480 0.13 -1.7
1,907,042 + AO356_08480 0.13 -1.5
1,907,042 + AO356_08480 0.13 -1.2
1,907,042 + AO356_08480 0.13 -1.5
1,907,042 + AO356_08480 0.13 -0.3
1,907,043 - AO356_08480 0.13 -1.3
1,907,043 - AO356_08480 0.13 -1.6
1,907,043 - AO356_08480 0.13 -2.8
1,907,043 - AO356_08480 0.13 -0.9
1,907,043 - AO356_08480 0.13 -0.8
1,907,043 - AO356_08480 0.13 -0.4
1,907,043 - AO356_08480 0.13 -1.2
1,907,043 - AO356_08480 0.13 -0.9
1,907,043 - AO356_08480 0.13 -1.2
1,907,043 - AO356_08480 0.13 -0.1
1,907,043 - AO356_08480 0.13 -2.1
1,907,043 - AO356_08480 0.13 -0.7
1,907,330 + AO356_08480 0.53 -1.5
1,907,330 + AO356_08480 0.53 -0.5
1,907,438 + AO356_08480 0.68 +0.0
1,907,438 + AO356_08480 0.68 -1.4
1,907,438 + AO356_08480 0.68 -0.3
1,907,438 + AO356_08480 0.68 -1.6
1,907,438 + AO356_08480 0.68 -0.6
1,907,438 + AO356_08480 0.68 -2.0
1,907,438 + AO356_08480 0.68 -0.1
1,907,438 + AO356_08480 0.68 -1.6
1,907,438 + AO356_08480 0.68 -1.0
1,907,439 - AO356_08480 0.68 -0.6
1,907,439 - AO356_08480 0.68 -1.9
1,907,439 - AO356_08480 0.68 -1.6
1,907,439 - AO356_08480 0.68 -0.8
1,907,439 - AO356_08480 0.68 -1.4
1,907,439 - AO356_08480 0.68 -1.1
1,907,474 + AO356_08480 0.73 -0.4
1,907,474 + AO356_08480 0.73 -1.2
1,907,475 - AO356_08480 0.74 -0.9
1,907,475 - AO356_08480 0.74 -2.2
1,907,475 - AO356_08480 0.74 -1.4
1,907,475 - AO356_08480 0.74 -0.3
1,907,475 - AO356_08480 0.74 +0.3
1,907,621 + -0.1
1,907,621 + -1.2
1,907,622 - -1.2
1,907,652 + +0.1
1,907,652 + -1.9
1,907,653 - -1.6
1,907,653 - -1.1
1,907,664 + -1.1
1,907,664 + -2.2
1,907,664 + -0.2
1,907,664 + -1.5
1,907,664 + -0.4
1,907,664 + -1.2
1,907,664 + -1.2
1,907,665 - -1.5
1,907,665 - -0.3
1,907,665 - -0.4
1,907,665 - +0.3
1,907,692 + -2.3
1,907,692 + -1.5
1,907,793 + AO356_08485 0.15 -0.4
1,907,793 + AO356_08485 0.15 -1.4
1,907,793 + AO356_08485 0.15 +0.2
1,907,793 + AO356_08485 0.15 -2.1
1,907,793 + AO356_08485 0.15 -0.7
1,907,978 - AO356_08485 0.36 -1.5
1,908,037 + AO356_08485 0.43 -1.1
1,908,038 - AO356_08485 0.43 -1.2
1,908,191 + AO356_08485 0.61 -1.9
1,908,192 - AO356_08485 0.61 -0.5
1,908,241 + AO356_08485 0.66 -1.4
1,908,241 + AO356_08485 0.66 -0.1
1,908,241 + AO356_08485 0.66 -1.0
1,908,242 - AO356_08485 0.67 -0.8
1,908,242 - AO356_08485 0.67 -0.1
1,908,242 - AO356_08485 0.67 -1.2
1,908,242 - AO356_08485 0.67 -3.1
1,908,244 + AO356_08485 0.67 -1.4
1,908,244 + AO356_08485 0.67 -1.0
1,908,244 + AO356_08485 0.67 -1.1
1,908,245 - AO356_08485 0.67 +0.0
1,908,245 - AO356_08485 0.67 -1.0
1,908,245 - AO356_08485 0.67 -1.2
1,908,370 + AO356_08485 0.81 -1.0
1,908,370 + AO356_08485 0.81 -0.7
1,908,370 + AO356_08485 0.81 -1.7
1,908,371 - AO356_08485 0.81 -2.0
1,908,371 - AO356_08485 0.81 -0.6
1,908,520 - -1.6
1,908,574 + -1.8
1,908,643 - -0.3
1,908,643 - -0.5

Or see this region's nucleotide sequence