Experiment: MoYLS4 with Nitrite 0.025mg/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU2074 and parA overlap by 7 nucleotides parA and cheR-2 are separated by 50 nucleotides cheR-2 and DVU2077 overlap by 4 nucleotides
DVU2074: DVU2074 - chemotaxis protein CheW (TIGR), at 2,157,876 to 2,158,526
DVU2074
DVU2075: parA - ParA family protein (TIGR), at 2,158,520 to 2,159,296
parA
DVU2076: cheR-2 - chemotaxis protein methyltransferase (TIGR), at 2,159,347 to 2,160,225
cheR-2
DVU2077: DVU2077 - conserved hypothetical protein (TIGR), at 2,160,222 to 2,162,150
DVU2077
Position (kb)
2159
2160
2161 Strain fitness (log2 ratio)
-1
0
1 at 2158.767 kb on + strand, within parA at 2158.847 kb on - strand, within parA at 2159.074 kb on - strand, within parA at 2159.221 kb on + strand at 2159.228 kb on + strand at 2159.292 kb on - strand at 2159.292 kb on - strand at 2159.292 kb on - strand at 2159.345 kb on + strand at 2159.345 kb on + strand at 2159.345 kb on + strand at 2159.345 kb on + strand at 2159.353 kb on - strand at 2159.358 kb on - strand at 2159.555 kb on + strand, within cheR-2 at 2159.587 kb on - strand, within cheR-2 at 2159.613 kb on + strand, within cheR-2 at 2159.624 kb on + strand, within cheR-2 at 2159.639 kb on - strand, within cheR-2 at 2159.678 kb on + strand, within cheR-2 at 2159.849 kb on + strand, within cheR-2 at 2159.871 kb on + strand, within cheR-2 at 2159.874 kb on - strand, within cheR-2 at 2159.902 kb on + strand, within cheR-2 at 2160.024 kb on + strand, within cheR-2 at 2160.039 kb on + strand, within cheR-2 at 2160.098 kb on - strand, within cheR-2 at 2160.121 kb on - strand, within cheR-2 at 2160.138 kb on + strand at 2160.222 kb on + strand at 2160.806 kb on - strand, within DVU2077 at 2160.864 kb on + strand, within DVU2077 at 2160.912 kb on + strand, within DVU2077 at 2160.922 kb on - strand, within DVU2077 at 2160.984 kb on + strand, within DVU2077 at 2160.999 kb on - strand, within DVU2077
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nitrite 0.025mg/mL remove 2,158,767 + parA DVU2075 0.32 -0.4 2,158,847 - parA DVU2075 0.42 +0.7 2,159,074 - parA DVU2075 0.71 +0.4 2,159,221 + -0.1 2,159,228 + -0.2 2,159,292 - -1.4 2,159,292 - -0.2 2,159,292 - -1.1 2,159,345 + -0.2 2,159,345 + -0.7 2,159,345 + -0.4 2,159,345 + +0.0 2,159,353 - -0.8 2,159,358 - -0.3 2,159,555 + cheR-2 DVU2076 0.24 -0.7 2,159,587 - cheR-2 DVU2076 0.27 -0.0 2,159,613 + cheR-2 DVU2076 0.30 -1.3 2,159,624 + cheR-2 DVU2076 0.32 -0.9 2,159,639 - cheR-2 DVU2076 0.33 -0.9 2,159,678 + cheR-2 DVU2076 0.38 +0.6 2,159,849 + cheR-2 DVU2076 0.57 -0.9 2,159,871 + cheR-2 DVU2076 0.60 -0.8 2,159,874 - cheR-2 DVU2076 0.60 -1.5 2,159,902 + cheR-2 DVU2076 0.63 -0.9 2,160,024 + cheR-2 DVU2076 0.77 +1.4 2,160,039 + cheR-2 DVU2076 0.79 -0.8 2,160,098 - cheR-2 DVU2076 0.85 +0.2 2,160,121 - cheR-2 DVU2076 0.88 +0.3 2,160,138 + -0.2 2,160,222 + -0.0 2,160,806 - DVU2077 0.30 +0.2 2,160,864 + DVU2077 0.33 -0.1 2,160,912 + DVU2077 0.36 -0.1 2,160,922 - DVU2077 0.36 +0.1 2,160,984 + DVU2077 0.40 -0.7 2,160,999 - DVU2077 0.40 +0.1
Or see this region's nucleotide sequence