Strain Fitness in Sphingomonas koreensis DSMZ 15582 around Ga0059261_1560

Experiment: inner cut, LB soft agar motility assay

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGa0059261_1558 and Ga0059261_1559 are separated by 67 nucleotidesGa0059261_1559 and Ga0059261_1560 are separated by 87 nucleotidesGa0059261_1560 and Ga0059261_1561 overlap by 1 nucleotides Ga0059261_1558: Ga0059261_1558 - Aspartate/tyrosine/aromatic aminotransferase, at 1,630,527 to 1,631,696 _1558 Ga0059261_1559: Ga0059261_1559 - hypothetical protein, at 1,631,764 to 1,631,916 _1559 Ga0059261_1560: Ga0059261_1560 - Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain, at 1,632,004 to 1,632,537 _1560 Ga0059261_1561: Ga0059261_1561 - Signal transduction histidine kinase, at 1,632,537 to 1,633,838 _1561 Position (kb) 1632 1633Strain fitness (log2 ratio) -2 -1 0 1 2at 1631.080 kb on + strand, within Ga0059261_1558at 1631.080 kb on + strand, within Ga0059261_1558at 1631.080 kb on + strand, within Ga0059261_1558at 1631.081 kb on - strand, within Ga0059261_1558at 1631.081 kb on - strand, within Ga0059261_1558at 1631.081 kb on - strand, within Ga0059261_1558at 1631.097 kb on + strand, within Ga0059261_1558at 1631.097 kb on + strand, within Ga0059261_1558at 1631.098 kb on - strand, within Ga0059261_1558at 1631.098 kb on - strand, within Ga0059261_1558at 1631.098 kb on - strand, within Ga0059261_1558at 1631.098 kb on - strand, within Ga0059261_1558at 1631.257 kb on - strand, within Ga0059261_1558at 1631.257 kb on - strand, within Ga0059261_1558at 1631.326 kb on + strand, within Ga0059261_1558at 1631.326 kb on + strand, within Ga0059261_1558at 1631.326 kb on + strand, within Ga0059261_1558at 1631.326 kb on + strand, within Ga0059261_1558at 1631.327 kb on - strand, within Ga0059261_1558at 1631.335 kb on + strand, within Ga0059261_1558at 1631.336 kb on - strand, within Ga0059261_1558at 1631.465 kb on + strand, within Ga0059261_1558at 1631.465 kb on + strand, within Ga0059261_1558at 1631.465 kb on + strand, within Ga0059261_1558at 1631.465 kb on + strand, within Ga0059261_1558at 1631.465 kb on + strand, within Ga0059261_1558at 1631.465 kb on + strand, within Ga0059261_1558at 1631.465 kb on + strand, within Ga0059261_1558at 1631.465 kb on + strand, within Ga0059261_1558at 1631.465 kb on + strand, within Ga0059261_1558at 1631.466 kb on - strand, within Ga0059261_1558at 1631.466 kb on - strand, within Ga0059261_1558at 1631.466 kb on - strand, within Ga0059261_1558at 1631.466 kb on - strand, within Ga0059261_1558at 1631.466 kb on - strand, within Ga0059261_1558at 1631.466 kb on - strand, within Ga0059261_1558at 1631.466 kb on - strand, within Ga0059261_1558at 1631.467 kb on + strand, within Ga0059261_1558at 1631.468 kb on - strand, within Ga0059261_1558at 1631.468 kb on - strand, within Ga0059261_1558at 1631.671 kb on + strandat 1631.672 kb on - strandat 1631.672 kb on - strandat 1631.672 kb on - strandat 1632.236 kb on + strand, within Ga0059261_1560at 1632.236 kb on + strandat 1632.236 kb on + strand, within Ga0059261_1560at 1632.236 kb on + strand, within Ga0059261_1560at 1632.237 kb on - strand, within Ga0059261_1560at 1632.288 kb on - strand, within Ga0059261_1560at 1633.378 kb on - strand, within Ga0059261_1561at 1633.378 kb on - strand, within Ga0059261_1561at 1633.387 kb on + strand, within Ga0059261_1561at 1633.387 kb on + strandat 1633.387 kb on + strand, within Ga0059261_1561at 1633.387 kb on + strand, within Ga0059261_1561at 1633.388 kb on - strand, within Ga0059261_1561at 1633.388 kb on - strand, within Ga0059261_1561at 1633.388 kb on - strand, within Ga0059261_1561at 1633.388 kb on - strand, within Ga0059261_1561at 1633.388 kb on - strand, within Ga0059261_1561at 1633.388 kb on - strand, within Ga0059261_1561at 1633.489 kb on + strand, within Ga0059261_1561at 1633.490 kb on - strand, within Ga0059261_1561at 1633.528 kb on + strand, within Ga0059261_1561at 1633.529 kb on - strand, within Ga0059261_1561at 1633.529 kb on - strand, within Ga0059261_1561at 1633.529 kb on - strand, within Ga0059261_1561

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Per-strain Table

Position Strand Gene LocusTag Fraction inner cut, LB soft agar motility assay
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1,631,080 + Ga0059261_1558 0.47 +0.8
1,631,080 + Ga0059261_1558 0.47 -2.5
1,631,080 + Ga0059261_1558 0.47 -0.6
1,631,081 - Ga0059261_1558 0.47 +0.4
1,631,081 - Ga0059261_1558 0.47 -2.4
1,631,081 - Ga0059261_1558 0.47 -0.4
1,631,097 + Ga0059261_1558 0.49 +1.3
1,631,097 + Ga0059261_1558 0.49 +1.9
1,631,098 - Ga0059261_1558 0.49 -1.5
1,631,098 - Ga0059261_1558 0.49 -0.5
1,631,098 - Ga0059261_1558 0.49 +1.5
1,631,098 - Ga0059261_1558 0.49 -1.8
1,631,257 - Ga0059261_1558 0.62 -0.3
1,631,257 - Ga0059261_1558 0.62 -0.6
1,631,326 + Ga0059261_1558 0.68 -2.4
1,631,326 + Ga0059261_1558 0.68 -0.5
1,631,326 + Ga0059261_1558 0.68 +0.3
1,631,326 + Ga0059261_1558 0.68 -1.2
1,631,327 - Ga0059261_1558 0.68 -1.6
1,631,335 + Ga0059261_1558 0.69 +0.0
1,631,336 - Ga0059261_1558 0.69 +1.3
1,631,465 + Ga0059261_1558 0.80 +0.6
1,631,465 + Ga0059261_1558 0.80 -1.3
1,631,465 + Ga0059261_1558 0.80 +1.8
1,631,465 + Ga0059261_1558 0.80 -0.5
1,631,465 + Ga0059261_1558 0.80 -0.5
1,631,465 + Ga0059261_1558 0.80 +0.6
1,631,465 + Ga0059261_1558 0.80 +1.5
1,631,465 + Ga0059261_1558 0.80 +0.5
1,631,465 + Ga0059261_1558 0.80 -1.9
1,631,466 - Ga0059261_1558 0.80 -1.1
1,631,466 - Ga0059261_1558 0.80 -1.3
1,631,466 - Ga0059261_1558 0.80 -2.0
1,631,466 - Ga0059261_1558 0.80 -1.9
1,631,466 - Ga0059261_1558 0.80 -1.8
1,631,466 - Ga0059261_1558 0.80 +0.1
1,631,466 - Ga0059261_1558 0.80 -0.5
1,631,467 + Ga0059261_1558 0.80 -1.8
1,631,468 - Ga0059261_1558 0.80 -0.6
1,631,468 - Ga0059261_1558 0.80 -1.0
1,631,671 + -2.0
1,631,672 - -1.3
1,631,672 - +0.8
1,631,672 - -2.7
1,632,236 + Ga0059261_1560 0.43 -1.7
1,632,236 + +1.3
1,632,236 + Ga0059261_1560 0.43 +0.3
1,632,236 + Ga0059261_1560 0.43 -2.5
1,632,237 - Ga0059261_1560 0.44 -1.0
1,632,288 - Ga0059261_1560 0.53 -2.0
1,633,378 - Ga0059261_1561 0.65 +1.3
1,633,378 - Ga0059261_1561 0.65 -0.3
1,633,387 + Ga0059261_1561 0.65 -0.7
1,633,387 + +0.0
1,633,387 + Ga0059261_1561 0.65 -1.3
1,633,387 + Ga0059261_1561 0.65 -1.6
1,633,388 - Ga0059261_1561 0.65 -1.6
1,633,388 - Ga0059261_1561 0.65 -2.1
1,633,388 - Ga0059261_1561 0.65 +0.3
1,633,388 - Ga0059261_1561 0.65 +1.8
1,633,388 - Ga0059261_1561 0.65 -1.1
1,633,388 - Ga0059261_1561 0.65 -1.3
1,633,489 + Ga0059261_1561 0.73 -1.1
1,633,490 - Ga0059261_1561 0.73 +0.3
1,633,528 + Ga0059261_1561 0.76 -0.3
1,633,529 - Ga0059261_1561 0.76 +0.7
1,633,529 - Ga0059261_1561 0.76 +0.3
1,633,529 - Ga0059261_1561 0.76 -1.8

Or see this region's nucleotide sequence