Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2274

Experiment: m.b. Thallium(I) acetate 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2273 and Dshi_2274 are separated by 125 nucleotidesDshi_2274 and Dshi_2275 are separated by 1 nucleotides Dshi_2273: Dshi_2273 - Homoserine dehydrogenase (RefSeq), at 2,395,765 to 2,397,051 _2273 Dshi_2274: Dshi_2274 - fructose-1,6-bisphosphatase, class II (RefSeq), at 2,397,177 to 2,398,148 _2274 Dshi_2275: Dshi_2275 - single-stranded-DNA-specific exonuclease RecJ (RefSeq), at 2,398,150 to 2,399,907 _2275 Position (kb) 2397 2398 2399Strain fitness (log2 ratio) -2 -1 0 1at 2397.541 kb on + strand, within Dshi_2274at 2397.541 kb on + strand, within Dshi_2274at 2397.646 kb on - strand, within Dshi_2274at 2397.712 kb on - strand, within Dshi_2274at 2397.962 kb on + strand, within Dshi_2274

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.004 mg/ml
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2,397,541 + Dshi_2274 0.37 -2.2
2,397,541 + Dshi_2274 0.37 -1.9
2,397,646 - Dshi_2274 0.48 -1.3
2,397,712 - Dshi_2274 0.55 -1.3
2,397,962 + Dshi_2274 0.81 -1.9

Or see this region's nucleotide sequence