Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04215

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04210 and MMP_RS04215 are separated by 11 nucleotidesMMP_RS04215 and MMP_RS04220 are separated by 48 nucleotidesMMP_RS04220 and MMP_RS04225 are separated by 86 nucleotides MMP_RS04210: MMP_RS04210 - aldo/keto reductase, at 800,375 to 801,568 _RS04210 MMP_RS04215: MMP_RS04215 - nickel pincer cofactor biosynthesis protein LarB, at 801,580 to 802,365 _RS04215 MMP_RS04220: MMP_RS04220 - queuosine precursor transporter, at 802,414 to 803,022 _RS04220 MMP_RS04225: MMP_RS04225 - hypothetical protein, at 803,109 to 803,621 _RS04225 Position (kb) 801 802 803Strain fitness (log2 ratio) -1 0 1at 800.671 kb on + strand, within MMP_RS04210at 800.719 kb on + strand, within MMP_RS04210at 800.871 kb on + strand, within MMP_RS04210at 800.872 kb on - strand, within MMP_RS04210at 800.873 kb on + strand, within MMP_RS04210at 800.873 kb on + strand, within MMP_RS04210at 800.892 kb on - strand, within MMP_RS04210at 800.892 kb on - strand, within MMP_RS04210at 800.892 kb on - strand, within MMP_RS04210at 800.893 kb on + strand, within MMP_RS04210at 800.893 kb on + strand, within MMP_RS04210at 800.893 kb on + strand, within MMP_RS04210at 800.899 kb on - strand, within MMP_RS04210at 800.899 kb on - strand, within MMP_RS04210at 800.899 kb on - strand, within MMP_RS04210at 800.900 kb on + strand, within MMP_RS04210at 800.900 kb on + strand, within MMP_RS04210at 800.903 kb on - strand, within MMP_RS04210at 800.903 kb on - strand, within MMP_RS04210at 800.904 kb on + strand, within MMP_RS04210at 800.904 kb on + strand, within MMP_RS04210at 800.941 kb on - strand, within MMP_RS04210at 801.003 kb on - strand, within MMP_RS04210at 801.010 kb on - strand, within MMP_RS04210at 801.037 kb on + strand, within MMP_RS04210at 801.069 kb on - strand, within MMP_RS04210at 801.232 kb on + strand, within MMP_RS04210at 801.257 kb on + strand, within MMP_RS04210at 801.257 kb on + strand, within MMP_RS04210at 801.262 kb on - strand, within MMP_RS04210at 801.326 kb on - strand, within MMP_RS04210at 801.326 kb on - strand, within MMP_RS04210at 801.326 kb on - strand, within MMP_RS04210at 801.391 kb on - strand, within MMP_RS04210at 801.392 kb on + strand, within MMP_RS04210at 801.394 kb on + strand, within MMP_RS04210at 801.442 kb on - strand, within MMP_RS04210at 801.467 kb on - strandat 801.467 kb on - strandat 801.467 kb on - strandat 801.468 kb on + strandat 801.468 kb on + strandat 801.597 kb on + strandat 801.608 kb on - strandat 801.648 kb on - strandat 801.665 kb on + strand, within MMP_RS04215at 801.687 kb on - strand, within MMP_RS04215at 801.696 kb on - strand, within MMP_RS04215at 801.696 kb on - strand, within MMP_RS04215at 801.697 kb on + strand, within MMP_RS04215at 801.697 kb on + strand, within MMP_RS04215at 801.895 kb on + strand, within MMP_RS04215at 802.035 kb on + strand, within MMP_RS04215at 802.035 kb on + strand, within MMP_RS04215at 802.037 kb on + strand, within MMP_RS04215at 802.037 kb on + strand, within MMP_RS04215at 802.265 kb on - strand, within MMP_RS04215at 802.407 kb on + strandat 802.443 kb on + strandat 802.445 kb on + strandat 802.469 kb on + strandat 802.474 kb on + strandat 802.529 kb on + strand, within MMP_RS04220at 802.587 kb on - strand, within MMP_RS04220at 802.628 kb on - strand, within MMP_RS04220at 802.660 kb on - strand, within MMP_RS04220at 802.661 kb on + strand, within MMP_RS04220at 802.661 kb on + strand, within MMP_RS04220at 802.661 kb on + strand, within MMP_RS04220at 802.661 kb on + strand, within MMP_RS04220at 802.680 kb on + strand, within MMP_RS04220at 802.723 kb on - strand, within MMP_RS04220at 802.748 kb on - strand, within MMP_RS04220at 802.869 kb on - strand, within MMP_RS04220at 802.879 kb on - strand, within MMP_RS04220at 802.880 kb on + strand, within MMP_RS04220at 802.883 kb on - strand, within MMP_RS04220at 802.971 kb on - strandat 802.971 kb on - strandat 802.971 kb on - strandat 802.971 kb on - strandat 802.971 kb on - strandat 802.972 kb on + strandat 802.972 kb on + strandat 803.016 kb on - strandat 803.032 kb on - strandat 803.033 kb on + strandat 803.036 kb on - strandat 803.036 kb on - strandat 803.037 kb on + strandat 803.046 kb on + strandat 803.081 kb on + strandat 803.126 kb on + strandat 803.130 kb on - strandat 803.151 kb on - strandat 803.152 kb on + strandat 803.152 kb on + strandat 803.164 kb on + strand, within MMP_RS04225at 803.186 kb on - strand, within MMP_RS04225at 803.196 kb on + strand, within MMP_RS04225at 803.264 kb on - strand, within MMP_RS04225at 803.265 kb on + strand, within MMP_RS04225at 803.359 kb on - strand, within MMP_RS04225

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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800,671 + MMP_RS04210 0.25 +0.5
800,719 + MMP_RS04210 0.29 -0.3
800,871 + MMP_RS04210 0.42 -0.4
800,872 - MMP_RS04210 0.42 -0.0
800,873 + MMP_RS04210 0.42 +0.1
800,873 + MMP_RS04210 0.42 +0.2
800,892 - MMP_RS04210 0.43 +0.2
800,892 - MMP_RS04210 0.43 +0.1
800,892 - MMP_RS04210 0.43 +0.2
800,893 + MMP_RS04210 0.43 -0.4
800,893 + MMP_RS04210 0.43 +0.3
800,893 + MMP_RS04210 0.43 +0.4
800,899 - MMP_RS04210 0.44 -0.3
800,899 - MMP_RS04210 0.44 +0.1
800,899 - MMP_RS04210 0.44 -0.1
800,900 + MMP_RS04210 0.44 +0.7
800,900 + MMP_RS04210 0.44 -0.2
800,903 - MMP_RS04210 0.44 +0.5
800,903 - MMP_RS04210 0.44 -0.6
800,904 + MMP_RS04210 0.44 +0.1
800,904 + MMP_RS04210 0.44 +0.4
800,941 - MMP_RS04210 0.47 -0.1
801,003 - MMP_RS04210 0.53 -0.1
801,010 - MMP_RS04210 0.53 -0.3
801,037 + MMP_RS04210 0.55 +0.4
801,069 - MMP_RS04210 0.58 -0.2
801,232 + MMP_RS04210 0.72 +0.2
801,257 + MMP_RS04210 0.74 +0.4
801,257 + MMP_RS04210 0.74 -0.6
801,262 - MMP_RS04210 0.74 -0.4
801,326 - MMP_RS04210 0.80 +0.3
801,326 - MMP_RS04210 0.80 -0.2
801,326 - MMP_RS04210 0.80 -0.1
801,391 - MMP_RS04210 0.85 -0.2
801,392 + MMP_RS04210 0.85 -0.1
801,394 + MMP_RS04210 0.85 +0.1
801,442 - MMP_RS04210 0.89 -0.2
801,467 - +0.0
801,467 - -0.0
801,467 - -0.1
801,468 + +0.1
801,468 + -0.5
801,597 + +0.2
801,608 - -0.4
801,648 - +0.1
801,665 + MMP_RS04215 0.11 -0.0
801,687 - MMP_RS04215 0.14 -0.2
801,696 - MMP_RS04215 0.15 +0.6
801,696 - MMP_RS04215 0.15 +0.2
801,697 + MMP_RS04215 0.15 +0.3
801,697 + MMP_RS04215 0.15 +0.2
801,895 + MMP_RS04215 0.40 +0.6
802,035 + MMP_RS04215 0.58 +0.0
802,035 + MMP_RS04215 0.58 +0.5
802,037 + MMP_RS04215 0.58 -0.5
802,037 + MMP_RS04215 0.58 -0.1
802,265 - MMP_RS04215 0.87 +0.2
802,407 + -0.2
802,443 + +0.4
802,445 + -0.1
802,469 + +0.2
802,474 + -0.3
802,529 + MMP_RS04220 0.19 +0.1
802,587 - MMP_RS04220 0.28 -0.2
802,628 - MMP_RS04220 0.35 +0.1
802,660 - MMP_RS04220 0.40 +0.3
802,661 + MMP_RS04220 0.41 +0.2
802,661 + MMP_RS04220 0.41 +0.0
802,661 + MMP_RS04220 0.41 -0.2
802,661 + MMP_RS04220 0.41 +0.1
802,680 + MMP_RS04220 0.44 -0.5
802,723 - MMP_RS04220 0.51 -0.1
802,748 - MMP_RS04220 0.55 -0.2
802,869 - MMP_RS04220 0.75 -0.7
802,879 - MMP_RS04220 0.76 +0.2
802,880 + MMP_RS04220 0.77 -0.3
802,883 - MMP_RS04220 0.77 +0.4
802,971 - -0.2
802,971 - -0.1
802,971 - -0.2
802,971 - +0.1
802,971 - +0.2
802,972 + -0.1
802,972 + +0.2
803,016 - -0.0
803,032 - -0.2
803,033 + -0.1
803,036 - -0.3
803,036 - -0.1
803,037 + +0.0
803,046 + -0.2
803,081 + +0.2
803,126 + +0.5
803,130 - +0.1
803,151 - +0.0
803,152 + -0.1
803,152 + +0.0
803,164 + MMP_RS04225 0.11 +0.4
803,186 - MMP_RS04225 0.15 +0.2
803,196 + MMP_RS04225 0.17 +0.1
803,264 - MMP_RS04225 0.30 +0.0
803,265 + MMP_RS04225 0.30 +0.3
803,359 - MMP_RS04225 0.49 +0.3

Or see this region's nucleotide sequence