Experiment: LB 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0840 and Shew_0841 are separated by 192 nucleotides Shew_0841 and Shew_0842 are separated by 91 nucleotides Shew_0842 and Shew_0843 are separated by 61 nucleotides
Shew_0840: Shew_0840 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 963,046 to 963,813
_0840
Shew_0841: Shew_0841 - hypothetical protein (RefSeq), at 964,006 to 964,380
_0841
Shew_0842: Shew_0842 - two component LuxR family transcriptional regulator (RefSeq), at 964,472 to 965,101
_0842
Shew_0843: Shew_0843 - nitrate/nitrite sensor protein NarQ (RefSeq), at 965,163 to 966,866
_0843
Position (kb) 964
965
966 Strain fitness (log2 ratio) -1
0
1 at 963.693 kb on + strand, within Shew_0840 at 964.169 kb on - strand, within Shew_0841 at 964.210 kb on - strand, within Shew_0841 at 964.252 kb on - strand, within Shew_0841 at 964.278 kb on + strand, within Shew_0841 at 964.477 kb on + strand at 964.485 kb on - strand at 964.547 kb on + strand, within Shew_0842 at 964.725 kb on + strand, within Shew_0842 at 964.919 kb on - strand, within Shew_0842 at 965.227 kb on - strand at 965.587 kb on + strand, within Shew_0843 at 965.606 kb on + strand, within Shew_0843 at 965.620 kb on + strand, within Shew_0843 at 965.745 kb on + strand, within Shew_0843 at 965.753 kb on + strand, within Shew_0843 at 965.894 kb on + strand, within Shew_0843
Per-strain Table
Position Strand Gene LocusTag Fraction LB 30C remove 963,693 + Shew_0840 0.84 +0.1 964,169 - Shew_0841 0.43 -0.0 964,210 - Shew_0841 0.54 -0.1 964,252 - Shew_0841 0.66 +0.1 964,278 + Shew_0841 0.73 -0.1 964,477 + +0.0 964,485 - +0.0 964,547 + Shew_0842 0.12 -0.0 964,725 + Shew_0842 0.40 +1.0 964,919 - Shew_0842 0.71 +0.6 965,227 - -0.0 965,587 + Shew_0843 0.25 -0.2 965,606 + Shew_0843 0.26 -0.1 965,620 + Shew_0843 0.27 +0.0 965,745 + Shew_0843 0.34 -0.1 965,753 + Shew_0843 0.35 -0.0 965,894 + Shew_0843 0.43 +0.2
Or see this region's nucleotide sequence