Strain Fitness in Shewanella loihica PV-4 around Shew_0581

Experiment: LB 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0580 and Shew_0581 are separated by 140 nucleotidesShew_0581 and Shew_0582 are separated by 97 nucleotides Shew_0580: Shew_0580 - succinylglutamic semialdehyde dehydrogenase (RefSeq), at 657,575 to 659,038 _0580 Shew_0581: Shew_0581 - hypothetical protein (RefSeq), at 659,179 to 659,979 _0581 Shew_0582: Shew_0582 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 660,077 to 661,414 _0582 Position (kb) 659 660Strain fitness (log2 ratio) -1 0 1at 658.303 kb on + strand, within Shew_0580at 658.524 kb on - strand, within Shew_0580at 658.729 kb on + strand, within Shew_0580at 659.327 kb on + strand, within Shew_0581at 659.335 kb on - strand, within Shew_0581at 659.417 kb on - strand, within Shew_0581at 659.417 kb on - strand, within Shew_0581at 659.448 kb on + strand, within Shew_0581at 659.456 kb on - strand, within Shew_0581at 659.497 kb on - strand, within Shew_0581at 659.826 kb on + strand, within Shew_0581at 659.894 kb on + strand, within Shew_0581at 660.208 kb on - strandat 660.265 kb on + strand, within Shew_0582at 660.379 kb on + strand, within Shew_0582at 660.474 kb on - strand, within Shew_0582at 660.761 kb on + strand, within Shew_0582at 660.820 kb on + strand, within Shew_0582

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 30C
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658,303 + Shew_0580 0.50 +0.2
658,524 - Shew_0580 0.65 -0.0
658,729 + Shew_0580 0.79 +0.0
659,327 + Shew_0581 0.18 -0.4
659,335 - Shew_0581 0.19 +0.5
659,417 - Shew_0581 0.30 +0.1
659,417 - Shew_0581 0.30 +0.9
659,448 + Shew_0581 0.34 +0.0
659,456 - Shew_0581 0.35 +0.8
659,497 - Shew_0581 0.40 +0.1
659,826 + Shew_0581 0.81 +1.0
659,894 + Shew_0581 0.89 +0.0
660,208 - +0.1
660,265 + Shew_0582 0.14 +0.5
660,379 + Shew_0582 0.23 +0.6
660,474 - Shew_0582 0.30 -0.1
660,761 + Shew_0582 0.51 -0.1
660,820 + Shew_0582 0.56 -0.2

Or see this region's nucleotide sequence