Experiment: periodate 0.00125 M
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_768 and Pf6N2E2_769 are separated by 1 nucleotides Pf6N2E2_769 and Pf6N2E2_770 are separated by 322 nucleotides Pf6N2E2_770 and Pf6N2E2_771 overlap by 4 nucleotides Pf6N2E2_771 and Pf6N2E2_772 are separated by 263 nucleotides
Pf6N2E2_768 - Fap amyloid fibril minor component, at 879,613 to 880,206
_768
Pf6N2E2_769 - Fap unknown function protein, at 880,208 to 880,654
_769
Pf6N2E2_770 - Ribosylnicotinamide kinase (EC 2.7.1.22), at 880,977 to 881,501
_770
Pf6N2E2_771 - Ribosyl nicotinamide transporter, PnuC-like, at 881,498 to 882,061
_771
Pf6N2E2_772 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 882,325 to 883,959
_772
Position (kb) 880
881
882 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.082 kb on + strand, within Pf6N2E2_768 at 880.144 kb on + strand, within Pf6N2E2_768 at 880.144 kb on + strand, within Pf6N2E2_768 at 880.145 kb on - strand, within Pf6N2E2_768 at 880.145 kb on - strand, within Pf6N2E2_768 at 880.206 kb on + strand at 880.207 kb on - strand at 880.207 kb on - strand at 880.207 kb on - strand at 880.883 kb on + strand at 880.884 kb on - strand at 880.973 kb on + strand at 880.973 kb on + strand at 880.974 kb on - strand at 880.974 kb on - strand at 881.189 kb on - strand, within Pf6N2E2_770 at 881.400 kb on + strand, within Pf6N2E2_770 at 881.401 kb on - strand, within Pf6N2E2_770 at 881.404 kb on + strand, within Pf6N2E2_770 at 881.404 kb on + strand, within Pf6N2E2_770 at 881.405 kb on - strand, within Pf6N2E2_770 at 881.405 kb on - strand, within Pf6N2E2_770 at 881.405 kb on - strand, within Pf6N2E2_770 at 881.405 kb on - strand, within Pf6N2E2_770 at 881.568 kb on + strand, within Pf6N2E2_771 at 881.568 kb on + strand, within Pf6N2E2_771 at 881.568 kb on + strand, within Pf6N2E2_771 at 881.569 kb on - strand, within Pf6N2E2_771 at 881.598 kb on + strand, within Pf6N2E2_771 at 881.599 kb on - strand, within Pf6N2E2_771 at 881.877 kb on + strand, within Pf6N2E2_771 at 881.878 kb on - strand, within Pf6N2E2_771 at 881.878 kb on - strand, within Pf6N2E2_771 at 881.896 kb on - strand, within Pf6N2E2_771 at 881.896 kb on - strand, within Pf6N2E2_771 at 881.896 kb on - strand, within Pf6N2E2_771 at 881.922 kb on + strand, within Pf6N2E2_771 at 881.922 kb on + strand, within Pf6N2E2_771 at 881.922 kb on + strand, within Pf6N2E2_771 at 881.952 kb on + strand, within Pf6N2E2_771 at 881.952 kb on + strand, within Pf6N2E2_771 at 881.953 kb on - strand, within Pf6N2E2_771 at 881.953 kb on - strand, within Pf6N2E2_771 at 882.079 kb on + strand at 882.080 kb on - strand at 882.080 kb on - strand at 882.080 kb on - strand at 882.098 kb on + strand at 882.126 kb on - strand at 882.166 kb on + strand at 882.167 kb on - strand at 882.167 kb on - strand at 882.283 kb on + strand at 882.283 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction periodate 0.00125 M remove 880,082 + Pf6N2E2_768 0.79 -0.2 880,082 + Pf6N2E2_768 0.79 +0.7 880,082 + Pf6N2E2_768 0.79 -1.1 880,082 + Pf6N2E2_768 0.79 +0.1 880,144 + Pf6N2E2_768 0.89 -0.5 880,144 + Pf6N2E2_768 0.89 +0.3 880,145 - Pf6N2E2_768 0.90 -1.4 880,145 - Pf6N2E2_768 0.90 -2.7 880,206 + +2.3 880,207 - -0.1 880,207 - -0.0 880,207 - -1.0 880,883 + +0.6 880,884 - -0.1 880,973 + +0.4 880,973 + -0.3 880,974 - -0.5 880,974 - -1.1 881,189 - Pf6N2E2_770 0.40 -0.1 881,400 + Pf6N2E2_770 0.81 +1.7 881,401 - Pf6N2E2_770 0.81 +0.3 881,404 + Pf6N2E2_770 0.81 -3.1 881,404 + Pf6N2E2_770 0.81 -1.2 881,405 - Pf6N2E2_770 0.82 +0.3 881,405 - Pf6N2E2_770 0.82 +2.4 881,405 - Pf6N2E2_770 0.82 +1.5 881,405 - Pf6N2E2_770 0.82 +0.9 881,568 + Pf6N2E2_771 0.12 -0.6 881,568 + Pf6N2E2_771 0.12 -0.2 881,568 + Pf6N2E2_771 0.12 +0.6 881,569 - Pf6N2E2_771 0.13 +1.4 881,598 + Pf6N2E2_771 0.18 -0.6 881,599 - Pf6N2E2_771 0.18 +2.1 881,877 + Pf6N2E2_771 0.67 -0.9 881,878 - Pf6N2E2_771 0.67 -0.9 881,878 - Pf6N2E2_771 0.67 -0.5 881,896 - Pf6N2E2_771 0.71 -0.4 881,896 - Pf6N2E2_771 0.71 +0.1 881,896 - Pf6N2E2_771 0.71 -0.5 881,922 + Pf6N2E2_771 0.75 -2.2 881,922 + Pf6N2E2_771 0.75 +0.8 881,922 + Pf6N2E2_771 0.75 +0.7 881,952 + Pf6N2E2_771 0.80 -0.6 881,952 + Pf6N2E2_771 0.80 -0.5 881,953 - Pf6N2E2_771 0.81 +0.2 881,953 - Pf6N2E2_771 0.81 -0.2 882,079 + -0.9 882,080 - -0.7 882,080 - +1.2 882,080 - -2.0 882,098 + -0.6 882,126 - +0.7 882,166 + +0.7 882,167 - -1.1 882,167 - +1.2 882,283 + +0.2 882,283 + -0.3
Or see this region's nucleotide sequence