Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_690

Experiment: periodate 0.00125 M

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_688 and Pf6N2E2_689 are separated by 198 nucleotidesPf6N2E2_689 and Pf6N2E2_690 are separated by 259 nucleotidesPf6N2E2_690 and Pf6N2E2_691 are separated by 108 nucleotides Pf6N2E2_688 - Transcriptional regulator, LysR family, at 794,164 to 795,087 _688 Pf6N2E2_689 - FIG00956189: hypothetical protein, at 795,286 to 795,780 _689 Pf6N2E2_690 - Transcriptional regulator, LysR family, at 796,040 to 796,936 _690 Pf6N2E2_691 - D-galactarate permease, at 797,045 to 798,442 _691 Position (kb) 796 797Strain fitness (log2 ratio) -2 -1 0 1 2at 795.116 kb on + strandat 795.216 kb on - strandat 795.427 kb on + strand, within Pf6N2E2_689at 795.427 kb on + strand, within Pf6N2E2_689at 795.548 kb on + strand, within Pf6N2E2_689at 795.548 kb on + strand, within Pf6N2E2_689at 795.740 kb on + strandat 795.740 kb on + strandat 795.740 kb on + strandat 795.741 kb on - strandat 795.741 kb on - strandat 795.741 kb on - strandat 795.755 kb on + strandat 795.755 kb on + strandat 795.755 kb on + strandat 795.756 kb on - strandat 795.756 kb on - strandat 795.756 kb on - strandat 795.756 kb on - strandat 795.820 kb on + strandat 795.821 kb on - strandat 795.821 kb on - strandat 796.023 kb on + strandat 796.353 kb on + strand, within Pf6N2E2_690at 796.353 kb on + strand, within Pf6N2E2_690at 796.353 kb on + strand, within Pf6N2E2_690at 796.354 kb on - strand, within Pf6N2E2_690at 796.354 kb on - strand, within Pf6N2E2_690at 796.354 kb on - strand, within Pf6N2E2_690at 796.437 kb on - strand, within Pf6N2E2_690at 796.437 kb on - strand, within Pf6N2E2_690at 796.545 kb on + strand, within Pf6N2E2_690at 796.546 kb on - strand, within Pf6N2E2_690at 796.546 kb on - strand, within Pf6N2E2_690at 796.627 kb on - strand, within Pf6N2E2_690at 796.805 kb on + strand, within Pf6N2E2_690at 796.805 kb on + strand, within Pf6N2E2_690at 796.806 kb on - strand, within Pf6N2E2_690at 796.971 kb on - strandat 797.115 kb on + strandat 797.150 kb on + strandat 797.150 kb on + strandat 797.150 kb on + strandat 797.150 kb on + strandat 797.278 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.387 kb on + strand, within Pf6N2E2_691at 797.388 kb on - strand, within Pf6N2E2_691at 797.391 kb on + strand, within Pf6N2E2_691at 797.392 kb on - strand, within Pf6N2E2_691at 797.392 kb on - strand, within Pf6N2E2_691at 797.392 kb on - strand, within Pf6N2E2_691at 797.392 kb on - strand, within Pf6N2E2_691at 797.444 kb on + strand, within Pf6N2E2_691at 797.444 kb on + strand, within Pf6N2E2_691at 797.444 kb on + strand, within Pf6N2E2_691at 797.445 kb on - strand, within Pf6N2E2_691at 797.445 kb on - strand, within Pf6N2E2_691at 797.447 kb on + strand, within Pf6N2E2_691at 797.463 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.840 kb on + strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691at 797.841 kb on - strand, within Pf6N2E2_691

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Per-strain Table

Position Strand Gene LocusTag Fraction periodate 0.00125 M
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795,116 + +1.1
795,216 - +0.6
795,427 + Pf6N2E2_689 0.28 +0.2
795,427 + Pf6N2E2_689 0.28 +0.5
795,548 + Pf6N2E2_689 0.53 +0.5
795,548 + Pf6N2E2_689 0.53 -1.4
795,740 + +0.8
795,740 + +0.8
795,740 + +0.8
795,741 - +0.0
795,741 - +0.2
795,741 - +2.5
795,755 + +0.4
795,755 + +0.7
795,755 + +0.8
795,756 - +0.5
795,756 - -0.2
795,756 - +0.6
795,756 - -1.0
795,820 + +0.9
795,821 - +0.6
795,821 - +0.7
796,023 + -0.3
796,353 + Pf6N2E2_690 0.35 +0.4
796,353 + Pf6N2E2_690 0.35 +0.4
796,353 + Pf6N2E2_690 0.35 +0.2
796,354 - Pf6N2E2_690 0.35 -1.2
796,354 - Pf6N2E2_690 0.35 -0.7
796,354 - Pf6N2E2_690 0.35 +0.5
796,437 - Pf6N2E2_690 0.44 -1.0
796,437 - Pf6N2E2_690 0.44 +1.3
796,545 + Pf6N2E2_690 0.56 +1.3
796,546 - Pf6N2E2_690 0.56 -0.3
796,546 - Pf6N2E2_690 0.56 -1.1
796,627 - Pf6N2E2_690 0.65 +1.4
796,805 + Pf6N2E2_690 0.85 +1.8
796,805 + Pf6N2E2_690 0.85 +1.2
796,806 - Pf6N2E2_690 0.85 +1.2
796,971 - +1.8
797,115 + +0.9
797,150 + +1.3
797,150 + -1.2
797,150 + +0.8
797,150 + -0.0
797,278 + Pf6N2E2_691 0.17 +0.7
797,387 + Pf6N2E2_691 0.24 -0.4
797,387 + Pf6N2E2_691 0.24 +0.8
797,387 + Pf6N2E2_691 0.24 -1.0
797,387 + Pf6N2E2_691 0.24 +0.5
797,387 + Pf6N2E2_691 0.24 -0.0
797,387 + Pf6N2E2_691 0.24 -1.0
797,387 + Pf6N2E2_691 0.24 +0.4
797,387 + Pf6N2E2_691 0.24 +0.3
797,388 - Pf6N2E2_691 0.25 -0.1
797,391 + Pf6N2E2_691 0.25 -2.0
797,392 - Pf6N2E2_691 0.25 +1.8
797,392 - Pf6N2E2_691 0.25 +1.0
797,392 - Pf6N2E2_691 0.25 +1.5
797,392 - Pf6N2E2_691 0.25 +0.5
797,444 + Pf6N2E2_691 0.29 -0.6
797,444 + Pf6N2E2_691 0.29 +0.3
797,444 + Pf6N2E2_691 0.29 +0.6
797,445 - Pf6N2E2_691 0.29 +0.1
797,445 - Pf6N2E2_691 0.29 +0.2
797,447 + Pf6N2E2_691 0.29 -0.8
797,463 + Pf6N2E2_691 0.30 -0.3
797,840 + Pf6N2E2_691 0.57 -0.9
797,840 + Pf6N2E2_691 0.57 -1.2
797,840 + Pf6N2E2_691 0.57 -1.0
797,840 + Pf6N2E2_691 0.57 -0.2
797,840 + Pf6N2E2_691 0.57 -0.0
797,840 + Pf6N2E2_691 0.57 -1.1
797,840 + Pf6N2E2_691 0.57 -0.2
797,840 + Pf6N2E2_691 0.57 +1.2
797,841 - Pf6N2E2_691 0.57 -0.3
797,841 - Pf6N2E2_691 0.57 -1.3
797,841 - Pf6N2E2_691 0.57 +0.9
797,841 - Pf6N2E2_691 0.57 -0.6
797,841 - Pf6N2E2_691 0.57 +1.2
797,841 - Pf6N2E2_691 0.57 +1.4
797,841 - Pf6N2E2_691 0.57 -0.9

Or see this region's nucleotide sequence