Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_24475 and AO356_24480 are separated by 99 nucleotides AO356_24480 and AO356_24485 are separated by 65 nucleotides AO356_24485 and AO356_24490 are separated by 88 nucleotides AO356_24490 and AO356_24495 are separated by 235 nucleotides
AO356_24475: AO356_24475 - lytic transglycosylase, at 5,527,388 to 5,528,836
_24475
AO356_24480: AO356_24480 - hydroxyacylglutathione hydrolase, at 5,528,936 to 5,529,703
_24480
AO356_24485: AO356_24485 - SAM-dependent methyltransferase, at 5,529,769 to 5,530,527
_24485
AO356_24490: AO356_24490 - ribonuclease H, at 5,530,616 to 5,531,068
_24490
AO356_24495: AO356_24495 - DNA polymerase III subunit epsilon, at 5,531,304 to 5,532,065
_24495
Position (kb) 5529
5530
5531 Strain fitness (log2 ratio) -2
-1
0
1 at 5528.847 kb on + strand at 5528.847 kb on + strand at 5528.847 kb on + strand at 5528.848 kb on - strand at 5528.937 kb on + strand at 5528.937 kb on + strand at 5528.938 kb on - strand at 5528.944 kb on + strand at 5528.944 kb on + strand at 5528.945 kb on - strand at 5528.945 kb on - strand at 5529.198 kb on + strand, within AO356_24480 at 5529.198 kb on + strand, within AO356_24480 at 5529.198 kb on + strand, within AO356_24480 at 5529.198 kb on + strand, within AO356_24480 at 5529.198 kb on + strand, within AO356_24480 at 5529.199 kb on - strand, within AO356_24480 at 5529.199 kb on - strand, within AO356_24480 at 5529.213 kb on + strand, within AO356_24480 at 5529.214 kb on - strand, within AO356_24480 at 5529.223 kb on + strand, within AO356_24480 at 5529.223 kb on + strand, within AO356_24480 at 5529.224 kb on - strand, within AO356_24480 at 5529.345 kb on + strand, within AO356_24480 at 5529.346 kb on - strand, within AO356_24480 at 5529.346 kb on - strand, within AO356_24480 at 5529.348 kb on + strand, within AO356_24480 at 5529.367 kb on + strand, within AO356_24480 at 5529.367 kb on + strand, within AO356_24480 at 5529.368 kb on - strand, within AO356_24480 at 5529.368 kb on - strand, within AO356_24480 at 5529.368 kb on - strand, within AO356_24480 at 5529.663 kb on + strand at 5529.663 kb on + strand at 5529.663 kb on + strand at 5529.663 kb on + strand at 5529.664 kb on - strand at 5529.664 kb on - strand at 5529.664 kb on - strand at 5529.664 kb on - strand at 5529.699 kb on - strand at 5529.740 kb on + strand at 5529.740 kb on + strand at 5529.740 kb on + strand at 5529.741 kb on - strand at 5529.983 kb on + strand, within AO356_24485 at 5529.983 kb on + strand, within AO356_24485 at 5530.402 kb on + strand, within AO356_24485 at 5530.403 kb on - strand, within AO356_24485 at 5530.525 kb on + strand at 5530.526 kb on - strand at 5530.535 kb on + strand at 5530.561 kb on - strand at 5530.629 kb on + strand at 5530.629 kb on + strand at 5530.629 kb on + strand at 5531.209 kb on + strand at 5531.258 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 5,528,847 + -1.4 5,528,847 + -0.2 5,528,847 + -0.0 5,528,848 - -0.3 5,528,937 + -0.1 5,528,937 + -0.5 5,528,938 - -0.0 5,528,944 + +1.0 5,528,944 + +0.6 5,528,945 - +0.2 5,528,945 - +0.1 5,529,198 + AO356_24480 0.34 +0.7 5,529,198 + AO356_24480 0.34 +1.0 5,529,198 + AO356_24480 0.34 -0.1 5,529,198 + AO356_24480 0.34 -1.2 5,529,198 + AO356_24480 0.34 -0.4 5,529,199 - AO356_24480 0.34 +0.8 5,529,199 - AO356_24480 0.34 -0.1 5,529,213 + AO356_24480 0.36 +1.0 5,529,214 - AO356_24480 0.36 -1.3 5,529,223 + AO356_24480 0.37 -0.1 5,529,223 + AO356_24480 0.37 +0.4 5,529,224 - AO356_24480 0.38 +0.2 5,529,345 + AO356_24480 0.53 +0.2 5,529,346 - AO356_24480 0.53 -0.3 5,529,346 - AO356_24480 0.53 -0.4 5,529,348 + AO356_24480 0.54 +0.1 5,529,367 + AO356_24480 0.56 -0.1 5,529,367 + AO356_24480 0.56 -1.0 5,529,368 - AO356_24480 0.56 -0.2 5,529,368 - AO356_24480 0.56 +1.2 5,529,368 - AO356_24480 0.56 +1.0 5,529,663 + +0.3 5,529,663 + -0.1 5,529,663 + +0.5 5,529,663 + -0.2 5,529,664 - +0.6 5,529,664 - +1.1 5,529,664 - -2.0 5,529,664 - -0.1 5,529,699 - +0.2 5,529,740 + +0.2 5,529,740 + -0.5 5,529,740 + +0.0 5,529,741 - +0.2 5,529,983 + AO356_24485 0.28 -0.7 5,529,983 + AO356_24485 0.28 -1.8 5,530,402 + AO356_24485 0.83 +0.4 5,530,403 - AO356_24485 0.84 -1.0 5,530,525 + +0.2 5,530,526 - -0.8 5,530,535 + +0.1 5,530,561 - -1.2 5,530,629 + -0.2 5,530,629 + -0.2 5,530,629 + -1.5 5,531,209 + +0.4 5,531,258 + +0.4
Or see this region's nucleotide sequence