Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_17515

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_17505 and AO356_17510 are separated by 49 nucleotidesAO356_17510 and AO356_17515 are separated by 166 nucleotidesAO356_17515 and AO356_17520 are separated by 354 nucleotides AO356_17505: AO356_17505 - DNA repair protein RecO, at 3,942,251 to 3,942,940 _17505 AO356_17510: AO356_17510 - pyridoxine 5'-phosphate synthase, at 3,942,990 to 3,943,733 _17510 AO356_17515: AO356_17515 - murein transglycosylase, at 3,943,900 to 3,945,294 _17515 AO356_17520: AO356_17520 - phosphoribosylformylglycinamidine synthase, at 3,945,649 to 3,949,545 _17520 Position (kb) 3943 3944 3945 3946Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3942.949 kb on + strandat 3942.949 kb on + strandat 3942.949 kb on + strandat 3942.949 kb on + strandat 3942.949 kb on + strandat 3942.950 kb on - strandat 3942.965 kb on + strandat 3943.855 kb on + strandat 3943.855 kb on + strandat 3943.856 kb on - strandat 3943.856 kb on - strandat 3943.881 kb on + strandat 3943.881 kb on + strandat 3943.881 kb on + strandat 3943.882 kb on - strandat 3943.882 kb on - strandat 3943.892 kb on + strandat 3943.892 kb on + strandat 3943.892 kb on + strandat 3943.892 kb on + strandat 3943.893 kb on - strandat 3943.893 kb on - strandat 3943.893 kb on - strandat 3943.893 kb on - strandat 3944.018 kb on + strandat 3944.019 kb on - strandat 3944.019 kb on - strandat 3944.022 kb on - strandat 3944.022 kb on - strandat 3944.070 kb on - strand, within AO356_17515at 3944.090 kb on + strand, within AO356_17515at 3944.090 kb on + strand, within AO356_17515at 3944.090 kb on + strand, within AO356_17515at 3944.090 kb on + strand, within AO356_17515at 3944.090 kb on + strand, within AO356_17515at 3944.091 kb on - strand, within AO356_17515at 3944.091 kb on - strand, within AO356_17515at 3944.091 kb on - strand, within AO356_17515at 3944.208 kb on + strand, within AO356_17515at 3944.209 kb on - strand, within AO356_17515at 3944.210 kb on + strand, within AO356_17515at 3944.210 kb on + strand, within AO356_17515at 3944.210 kb on + strand, within AO356_17515at 3944.210 kb on + strand, within AO356_17515at 3944.210 kb on + strand, within AO356_17515at 3944.210 kb on + strand, within AO356_17515at 3944.210 kb on + strand, within AO356_17515at 3944.211 kb on - strand, within AO356_17515at 3944.211 kb on - strand, within AO356_17515at 3944.211 kb on - strand, within AO356_17515at 3944.211 kb on - strand, within AO356_17515at 3944.211 kb on - strand, within AO356_17515at 3944.211 kb on - strand, within AO356_17515at 3944.276 kb on + strand, within AO356_17515at 3944.276 kb on + strand, within AO356_17515at 3944.276 kb on + strand, within AO356_17515at 3944.277 kb on - strand, within AO356_17515at 3944.277 kb on - strand, within AO356_17515at 3944.285 kb on + strand, within AO356_17515at 3944.285 kb on + strand, within AO356_17515at 3944.286 kb on - strand, within AO356_17515at 3944.286 kb on - strand, within AO356_17515at 3944.286 kb on - strand, within AO356_17515at 3944.426 kb on + strand, within AO356_17515at 3944.474 kb on + strand, within AO356_17515at 3944.495 kb on + strand, within AO356_17515at 3944.496 kb on - strand, within AO356_17515at 3944.496 kb on - strand, within AO356_17515at 3944.546 kb on + strand, within AO356_17515at 3944.546 kb on + strand, within AO356_17515at 3944.546 kb on + strand, within AO356_17515at 3944.547 kb on - strand, within AO356_17515at 3944.547 kb on - strand, within AO356_17515at 3944.571 kb on - strand, within AO356_17515at 3944.573 kb on + strand, within AO356_17515at 3944.573 kb on + strand, within AO356_17515at 3944.574 kb on - strand, within AO356_17515at 3944.574 kb on - strand, within AO356_17515at 3944.624 kb on + strand, within AO356_17515at 3944.624 kb on + strand, within AO356_17515at 3944.625 kb on - strand, within AO356_17515at 3944.625 kb on - strand, within AO356_17515at 3944.729 kb on + strand, within AO356_17515at 3944.729 kb on + strand, within AO356_17515at 3944.729 kb on + strand, within AO356_17515at 3944.730 kb on - strand, within AO356_17515at 3944.730 kb on - strand, within AO356_17515at 3944.730 kb on - strand, within AO356_17515at 3944.730 kb on - strand, within AO356_17515at 3944.730 kb on - strand, within AO356_17515at 3944.730 kb on - strand, within AO356_17515at 3944.838 kb on - strand, within AO356_17515at 3944.838 kb on - strand, within AO356_17515at 3944.838 kb on - strand, within AO356_17515at 3944.990 kb on + strand, within AO356_17515at 3945.164 kb on + strandat 3945.164 kb on + strandat 3945.165 kb on - strandat 3945.186 kb on + strandat 3945.200 kb on + strandat 3945.200 kb on + strandat 3945.200 kb on + strandat 3945.200 kb on + strandat 3945.200 kb on + strandat 3945.201 kb on - strandat 3945.250 kb on + strandat 3945.330 kb on - strandat 3945.369 kb on + strandat 3945.370 kb on - strandat 3945.371 kb on + strandat 3945.371 kb on + strandat 3945.372 kb on - strandat 3945.372 kb on - strandat 3945.394 kb on + strandat 3945.489 kb on + strandat 3945.522 kb on + strandat 3945.531 kb on - strandat 3945.531 kb on - strandat 3945.537 kb on - strandat 3945.595 kb on + strandat 3945.746 kb on - strandat 3945.982 kb on + strandat 3945.983 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,942,949 + -1.0
3,942,949 + -0.9
3,942,949 + +0.1
3,942,949 + +0.2
3,942,949 + -0.6
3,942,950 - +0.4
3,942,965 + +0.3
3,943,855 + -0.0
3,943,855 + +0.4
3,943,856 - -0.3
3,943,856 - +0.1
3,943,881 + +0.8
3,943,881 + -0.3
3,943,881 + -1.4
3,943,882 - -0.6
3,943,882 - -0.1
3,943,892 + -0.4
3,943,892 + +1.0
3,943,892 + +0.8
3,943,892 + -1.1
3,943,893 - +0.8
3,943,893 - -0.0
3,943,893 - +0.0
3,943,893 - +0.7
3,944,018 + -0.2
3,944,019 - -0.3
3,944,019 - +0.4
3,944,022 - -1.1
3,944,022 - -1.3
3,944,070 - AO356_17515 0.12 -0.1
3,944,090 + AO356_17515 0.14 -1.4
3,944,090 + AO356_17515 0.14 -1.2
3,944,090 + AO356_17515 0.14 +0.2
3,944,090 + AO356_17515 0.14 +0.8
3,944,090 + AO356_17515 0.14 -1.8
3,944,091 - AO356_17515 0.14 -1.1
3,944,091 - AO356_17515 0.14 -1.4
3,944,091 - AO356_17515 0.14 -2.0
3,944,208 + AO356_17515 0.22 -2.2
3,944,209 - AO356_17515 0.22 -0.4
3,944,210 + AO356_17515 0.22 +0.2
3,944,210 + AO356_17515 0.22 -0.5
3,944,210 + AO356_17515 0.22 -0.1
3,944,210 + AO356_17515 0.22 -0.6
3,944,210 + AO356_17515 0.22 +1.8
3,944,210 + AO356_17515 0.22 -1.0
3,944,210 + AO356_17515 0.22 -0.2
3,944,211 - AO356_17515 0.22 +0.2
3,944,211 - AO356_17515 0.22 -1.5
3,944,211 - AO356_17515 0.22 -1.2
3,944,211 - AO356_17515 0.22 +0.8
3,944,211 - AO356_17515 0.22 -0.1
3,944,211 - AO356_17515 0.22 -0.4
3,944,276 + AO356_17515 0.27 +1.2
3,944,276 + AO356_17515 0.27 -0.1
3,944,276 + AO356_17515 0.27 -1.2
3,944,277 - AO356_17515 0.27 -1.7
3,944,277 - AO356_17515 0.27 +0.0
3,944,285 + AO356_17515 0.28 -1.3
3,944,285 + AO356_17515 0.28 -1.6
3,944,286 - AO356_17515 0.28 -1.1
3,944,286 - AO356_17515 0.28 -1.0
3,944,286 - AO356_17515 0.28 +0.4
3,944,426 + AO356_17515 0.38 +0.3
3,944,474 + AO356_17515 0.41 +0.6
3,944,495 + AO356_17515 0.43 -1.4
3,944,496 - AO356_17515 0.43 +1.8
3,944,496 - AO356_17515 0.43 -1.5
3,944,546 + AO356_17515 0.46 -0.8
3,944,546 + AO356_17515 0.46 -1.4
3,944,546 + AO356_17515 0.46 -0.3
3,944,547 - AO356_17515 0.46 -0.7
3,944,547 - AO356_17515 0.46 -1.6
3,944,571 - AO356_17515 0.48 -1.4
3,944,573 + AO356_17515 0.48 +0.5
3,944,573 + AO356_17515 0.48 -0.4
3,944,574 - AO356_17515 0.48 +0.7
3,944,574 - AO356_17515 0.48 -0.1
3,944,624 + AO356_17515 0.52 -0.8
3,944,624 + AO356_17515 0.52 -0.5
3,944,625 - AO356_17515 0.52 +0.1
3,944,625 - AO356_17515 0.52 -0.8
3,944,729 + AO356_17515 0.59 -0.2
3,944,729 + AO356_17515 0.59 -1.0
3,944,729 + AO356_17515 0.59 -1.8
3,944,730 - AO356_17515 0.59 -0.2
3,944,730 - AO356_17515 0.59 +0.2
3,944,730 - AO356_17515 0.59 -0.8
3,944,730 - AO356_17515 0.59 +0.8
3,944,730 - AO356_17515 0.59 -0.2
3,944,730 - AO356_17515 0.59 -2.8
3,944,838 - AO356_17515 0.67 -1.0
3,944,838 - AO356_17515 0.67 -0.8
3,944,838 - AO356_17515 0.67 -0.1
3,944,990 + AO356_17515 0.78 -2.1
3,945,164 + -1.1
3,945,164 + +0.2
3,945,165 - +0.2
3,945,186 + +1.2
3,945,200 + -0.3
3,945,200 + +0.1
3,945,200 + -0.5
3,945,200 + -0.9
3,945,200 + -0.1
3,945,201 - -1.0
3,945,250 + +0.2
3,945,330 - +0.8
3,945,369 + -0.5
3,945,370 - -0.4
3,945,371 + -0.4
3,945,371 + +0.0
3,945,372 - +0.3
3,945,372 - +0.5
3,945,394 + +0.8
3,945,489 + -0.1
3,945,522 + -1.0
3,945,531 - +0.4
3,945,531 - -0.7
3,945,537 - +0.3
3,945,595 + -0.1
3,945,746 - +0.5
3,945,982 + -1.8
3,945,983 - -0.8

Or see this region's nucleotide sequence