Strain Fitness in Pantoea sp. MT58 around IAI47_15310

Experiment: Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=FW109 (pH 4.4); TreatmentDuration=0.5hrs; Outgrowth=LBkan50
3,225,104	+		IAI47_15300	0.77	+1.2
3,225,104	+		IAI47_15300	0.77	+0.3
3,225,104	+		IAI47_15300	0.77	-0.5
3,225,104	+		IAI47_15300	0.77	+0.8
3,225,104	+		IAI47_15300	0.77	-0.0
3,225,105	-		IAI47_15300	0.77	+0.3
3,225,106	+		IAI47_15300	0.77	+0.2
3,225,106	+		IAI47_15300	0.77	+0.3
3,225,106	+		IAI47_15300	0.77	-0.3
3,225,107	-		IAI47_15300	0.77	-0.5
3,225,107	-		IAI47_15300	0.77	-1.3
3,225,107	-		IAI47_15300	0.77	+0.1
3,225,107	-		IAI47_15300	0.77	-1.6
3,225,107	-		IAI47_15300	0.77	+0.4
3,225,191	-		IAI47_15300	0.86	+0.5
3,225,268	-				-1.1
3,225,281	-				-0.2
3,225,298	+				-0.4
3,225,299	-				+0.6
3,225,327	+				-0.8
3,225,327	+				+2.2
3,225,365	+				+1.3
3,225,365	+				+0.3
3,225,365	+				-0.5
3,225,365	+				-1.2
3,225,365	+				-0.1
3,225,366	-				+0.3
3,225,366	-				+0.3
3,225,366	-				+0.6
3,225,366	-				+2.4
3,225,592	+		IAI47_15305	0.32	+0.6
3,225,592	+		IAI47_15305	0.32	-0.7
3,225,593	-		IAI47_15305	0.32	-1.9
3,225,688	+		IAI47_15305	0.45	-0.4
3,225,688	+		IAI47_15305	0.45	-1.1
3,225,689	-		IAI47_15305	0.45	+0.2
3,225,696	+		IAI47_15305	0.46	+0.8
3,225,696	+		IAI47_15305	0.46	-0.4
3,225,696	+		IAI47_15305	0.46	-0.0
3,225,697	-		IAI47_15305	0.46	+0.8
3,225,842	+		IAI47_15305	0.66	+1.1
3,226,036	+				-1.9
3,226,037	-				+0.3
3,226,037	-				-2.2
3,226,069	+				+1.2
3,226,070	-				-0.6
3,226,070	-				+0.9
3,226,070	-				+0.1
3,226,303	+		IAI47_15310	0.30	-0.6
3,226,303	+		IAI47_15310	0.30	-0.0
3,226,303	+		IAI47_15310	0.30	+0.3
3,226,304	-		IAI47_15310	0.30	-0.4
3,226,304	-		IAI47_15310	0.30	+2.4
3,226,304	-		IAI47_15310	0.30	+0.7
3,226,357	-		IAI47_15310	0.37	+1.9
3,226,372	+		IAI47_15310	0.39	+0.5
3,226,372	+		IAI47_15310	0.39	-0.9
3,226,372	+		IAI47_15310	0.39	-0.2
3,226,373	-		IAI47_15310	0.40	+1.0
3,226,380	+		IAI47_15310	0.41	+1.0
3,226,380	+		IAI47_15310	0.41	+0.6
3,226,380	+		IAI47_15310	0.41	-0.2
3,226,380	+		IAI47_15310	0.41	+0.3
3,226,380	+		IAI47_15310	0.41	+1.3
3,226,381	-		IAI47_15310	0.41	-0.4
3,226,498	+		IAI47_15310	0.57	+0.2
3,226,498	+		IAI47_15310	0.57	-1.2
3,226,499	-		IAI47_15310	0.57	-2.7
3,226,499	-		IAI47_15310	0.57	-1.2
3,226,499	-		IAI47_15310	0.57	-1.2
3,226,698	+		IAI47_15310	0.85	+0.4
3,226,698	+		IAI47_15310	0.85	+2.2
3,226,698	+		IAI47_15310	0.85	-0.2
3,226,699	-		IAI47_15310	0.85	+2.5
3,226,699	-		IAI47_15310	0.85	-0.2
3,226,728	+		IAI47_15310	0.89	+0.1
3,226,729	-		IAI47_15310	0.89	+0.4
3,226,729	-		IAI47_15310	0.89	+2.8
3,226,748	+				+0.7
3,226,749	-				+0.9
3,226,801	-				-1.0
3,226,841	-				+1.6
3,226,841	-				+2.1
3,226,845	+				+1.4
3,226,846	-				-1.3
3,226,862	+				+1.6
3,226,863	-				-2.2
3,226,863	-				-3.1
3,226,863	-				+0.4
3,226,867	+				-1.1
3,226,910	+				+0.8
3,226,910	+				+0.3
3,226,911	-				-0.2
3,226,918	+				-1.6
3,226,918	+				-1.0
3,226,918	+				-0.0
3,226,919	-				+1.4
3,226,919	-				-1.9
3,226,919	-				-1.6
3,226,919	-				+0.3
3,227,004	+				+0.6
3,227,004	+				+0.4
3,227,005	-				+1.5
3,227,005	-				-1.0
3,227,005	-				-1.3
3,227,022	-				-0.1
3,227,064	+				-0.0
3,227,064	+				+1.6
3,227,065	-				+1.8
3,227,065	-				+1.6
3,227,065	-				-0.7
3,227,112	+		IAI47_15315	0.11	-2.4
3,227,113	-		IAI47_15315	0.11	+1.6
3,227,113	-		IAI47_15315	0.11	-2.6
3,227,146	+				+1.1
3,227,247	+		IAI47_15315	0.19	+0.9
3,227,248	-		IAI47_15315	0.20	+0.4
3,227,291	+		IAI47_15315	0.22	-0.3
3,227,291	+		IAI47_15315	0.22	-0.4
3,227,332	-		IAI47_15315	0.25	+0.6
3,227,346	+		IAI47_15315	0.26	-1.6
3,227,346	+		IAI47_15315	0.26	+0.3
3,227,346	+		IAI47_15315	0.26	+0.0
3,227,347	-		IAI47_15315	0.26	+1.2
3,227,347	-		IAI47_15315	0.26	-3.4
3,227,462	+		IAI47_15315	0.34	+0.5
3,227,462	+		IAI47_15315	0.34	-0.5
3,227,462	+		IAI47_15315	0.34	-1.4
3,227,462	+		IAI47_15315	0.34	-1.2
3,227,463	-		IAI47_15315	0.34	-1.2
3,227,463	-		IAI47_15315	0.34	-0.3
3,227,463	-		IAI47_15315	0.34	-0.9
3,227,463	-		IAI47_15315	0.34	+0.4
3,227,463	-		IAI47_15315	0.34	-0.8
3,227,463	-		IAI47_15315	0.34	-1.8
3,227,470	+		IAI47_15315	0.34	+0.9
3,227,471	-		IAI47_15315	0.34	-1.4
3,227,519	+		IAI47_15315	0.38	-0.2
3,227,519	+		IAI47_15315	0.38	+0.0
3,227,519	+		IAI47_15315	0.38	-0.3
3,227,520	-		IAI47_15315	0.38	-0.9
3,227,520	-		IAI47_15315	0.38	-2.2
3,227,520	-		IAI47_15315	0.38	+0.0
3,227,545	-		IAI47_15315	0.39	-3.6
3,227,545	-		IAI47_15315	0.39	-1.1
3,227,545	-		IAI47_15315	0.39	-2.2
3,227,545	-		IAI47_15315	0.39	+2.2
3,227,578	+		IAI47_15315	0.41	+1.6
3,227,578	+		IAI47_15315	0.41	-1.2
3,227,579	-		IAI47_15315	0.41	+1.0
3,227,581	-		IAI47_15315	0.42	-1.2
3,227,581	-		IAI47_15315	0.42	+0.6
3,227,581	-		IAI47_15315	0.42	+0.4
3,227,581	-		IAI47_15315	0.42	-0.6
3,227,581	-		IAI47_15315	0.42	-1.7
3,227,661	-		IAI47_15315	0.47	+0.6
3,227,661	-		IAI47_15315	0.47	-0.0
3,227,685	+		IAI47_15315	0.49	-1.8
3,227,685	+		IAI47_15315	0.49	-2.3
3,227,685	+		IAI47_15315	0.49	-2.4
3,227,685	+		IAI47_15315	0.49	-3.0
3,227,686	-		IAI47_15315	0.49	-0.2
3,227,686	-		IAI47_15315	0.49	-1.0
3,227,705	-		IAI47_15315	0.50	-0.1
3,227,738	+		IAI47_15315	0.52	-1.2
3,227,738	+		IAI47_15315	0.52	+0.6
3,227,738	+		IAI47_15315	0.52	+0.7
3,227,738	+		IAI47_15315	0.52	+0.2
3,227,738	+		IAI47_15315	0.52	+0.7
3,227,738	+		IAI47_15315	0.52	-1.0
3,227,738	+		IAI47_15315	0.52	-1.0
3,227,738	+		IAI47_15315	0.52	-0.6
3,227,738	+		IAI47_15315	0.52	+1.2
3,227,738	+		IAI47_15315	0.52	-0.7
3,227,738	+		IAI47_15315	0.52	-0.6
3,227,739	-		IAI47_15315	0.52	-2.8
3,227,739	-		IAI47_15315	0.52	-0.3
3,227,739	-		IAI47_15315	0.52	-1.9
3,227,739	-		IAI47_15315	0.52	-0.1
3,227,739	-		IAI47_15315	0.52	+1.2
3,227,739	-		IAI47_15315	0.52	-0.4
3,227,739	-		IAI47_15315	0.52	-1.0
3,227,781	-		IAI47_15315	0.55	+1.2