Strain Fitness in Methanococcus maripaludis S2 around MMP_RS08885

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03960 and MMP_RS03965 are separated by 168 nucleotidesMMP_RS03965 and MMP_RS08885 are separated by 114 nucleotidesMMP_RS08885 and MMP_RS03975 are separated by 111 nucleotidesMMP_RS03975 and MMP_RS03980 are separated by 31 nucleotidesMMP_RS03980 and MMP_RS03985 are separated by 118 nucleotides MMP_RS03960: MMP_RS03960 - hypothetical protein, at 752,250 to 752,480 _RS03960 MMP_RS03965: MMP_RS03965 - hypothetical protein, at 752,649 to 753,023 _RS03965 MMP_RS08885: MMP_RS08885 - tetratricopeptide repeat protein, at 753,138 to 753,662 _RS08885 MMP_RS03975: MMP_RS03975 - hypothetical protein, at 753,774 to 754,082 _RS03975 MMP_RS03980: MMP_RS03980 - hypothetical protein, at 754,114 to 754,386 _RS03980 MMP_RS03985: MMP_RS03985 - hypothetical protein, at 754,505 to 755,509 _RS03985 Position (kb) 753 754Strain fitness (log2 ratio) -2 -1 0 1at 752.169 kb on + strandat 752.171 kb on - strandat 752.172 kb on + strandat 752.178 kb on + strandat 752.236 kb on - strandat 752.376 kb on - strand, within MMP_RS03960at 752.526 kb on + strandat 752.528 kb on - strandat 752.531 kb on - strandat 752.534 kb on - strandat 752.535 kb on + strandat 752.776 kb on - strand, within MMP_RS03965at 752.987 kb on - strandat 752.987 kb on - strandat 752.998 kb on + strandat 753.012 kb on - strandat 753.176 kb on - strandat 753.177 kb on + strandat 753.250 kb on + strand, within MMP_RS08885at 753.269 kb on - strand, within MMP_RS08885at 753.275 kb on - strand, within MMP_RS08885at 753.275 kb on - strand, within MMP_RS08885at 753.283 kb on + strand, within MMP_RS08885at 753.285 kb on - strand, within MMP_RS08885at 753.349 kb on + strand, within MMP_RS08885at 753.349 kb on + strand, within MMP_RS08885at 753.434 kb on - strand, within MMP_RS08885at 753.447 kb on - strand, within MMP_RS08885at 753.450 kb on - strand, within MMP_RS08885at 753.454 kb on - strand, within MMP_RS08885at 753.455 kb on + strand, within MMP_RS08885at 753.478 kb on - strand, within MMP_RS08885at 753.546 kb on + strand, within MMP_RS08885at 753.546 kb on + strand, within MMP_RS08885at 753.549 kb on - strand, within MMP_RS08885at 753.549 kb on - strand, within MMP_RS08885at 753.549 kb on - strand, within MMP_RS08885at 753.550 kb on + strand, within MMP_RS08885at 753.550 kb on + strand, within MMP_RS08885at 753.553 kb on + strand, within MMP_RS08885at 753.569 kb on - strand, within MMP_RS08885at 753.570 kb on + strand, within MMP_RS08885at 753.600 kb on - strand, within MMP_RS08885at 753.608 kb on + strand, within MMP_RS08885at 753.624 kb on - strandat 753.658 kb on - strandat 753.661 kb on + strandat 753.682 kb on + strandat 753.709 kb on - strandat 753.740 kb on + strandat 753.747 kb on + strandat 753.785 kb on - strandat 753.809 kb on - strand, within MMP_RS03975at 753.810 kb on + strand, within MMP_RS03975at 753.867 kb on + strand, within MMP_RS03975at 753.869 kb on - strand, within MMP_RS03975at 753.870 kb on + strand, within MMP_RS03975at 753.950 kb on + strand, within MMP_RS03975at 753.957 kb on + strand, within MMP_RS03975at 753.967 kb on + strand, within MMP_RS03975at 753.997 kb on - strand, within MMP_RS03975at 753.997 kb on - strand, within MMP_RS03975at 753.998 kb on + strand, within MMP_RS03975at 754.000 kb on + strand, within MMP_RS03975at 754.015 kb on - strand, within MMP_RS03975at 754.021 kb on - strand, within MMP_RS03975at 754.021 kb on - strand, within MMP_RS03975at 754.022 kb on + strand, within MMP_RS03975at 754.022 kb on + strand, within MMP_RS03975at 754.023 kb on - strand, within MMP_RS03975at 754.023 kb on - strand, within MMP_RS03975at 754.023 kb on - strand, within MMP_RS03975at 754.023 kb on - strand, within MMP_RS03975at 754.023 kb on - strand, within MMP_RS03975at 754.024 kb on + strand, within MMP_RS03975at 754.025 kb on - strand, within MMP_RS03975at 754.026 kb on + strand, within MMP_RS03975at 754.026 kb on + strand, within MMP_RS03975at 754.026 kb on + strand, within MMP_RS03975at 754.070 kb on + strandat 754.073 kb on + strandat 754.177 kb on - strand, within MMP_RS03980at 754.228 kb on + strand, within MMP_RS03980at 754.241 kb on + strand, within MMP_RS03980at 754.264 kb on + strand, within MMP_RS03980at 754.266 kb on + strand, within MMP_RS03980at 754.284 kb on - strand, within MMP_RS03980at 754.299 kb on - strand, within MMP_RS03980at 754.305 kb on + strand, within MMP_RS03980at 754.305 kb on + strand, within MMP_RS03980at 754.323 kb on - strand, within MMP_RS03980at 754.323 kb on - strand, within MMP_RS03980at 754.347 kb on + strand, within MMP_RS03980at 754.408 kb on - strandat 754.502 kb on - strandat 754.541 kb on + strandat 754.594 kb on - strandat 754.597 kb on - strandat 754.601 kb on - strandat 754.635 kb on + strand, within MMP_RS03985

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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752,169 + -0.1
752,171 - +0.2
752,172 + +0.2
752,178 + -0.0
752,236 - +0.3
752,376 - MMP_RS03960 0.55 -0.8
752,526 + -1.6
752,528 - -0.9
752,531 - -0.5
752,534 - -1.8
752,535 + -1.2
752,776 - MMP_RS03965 0.34 +0.1
752,987 - -0.2
752,987 - +0.5
752,998 + +0.1
753,012 - -0.1
753,176 - -0.5
753,177 + -0.4
753,250 + MMP_RS08885 0.21 +0.3
753,269 - MMP_RS08885 0.25 +0.1
753,275 - MMP_RS08885 0.26 -0.2
753,275 - MMP_RS08885 0.26 +1.5
753,283 + MMP_RS08885 0.28 +0.3
753,285 - MMP_RS08885 0.28 -1.5
753,349 + MMP_RS08885 0.40 -0.2
753,349 + MMP_RS08885 0.40 -0.3
753,434 - MMP_RS08885 0.56 -0.1
753,447 - MMP_RS08885 0.59 -2.4
753,450 - MMP_RS08885 0.59 +0.2
753,454 - MMP_RS08885 0.60 +0.1
753,455 + MMP_RS08885 0.60 +0.7
753,478 - MMP_RS08885 0.65 -0.3
753,546 + MMP_RS08885 0.78 -0.0
753,546 + MMP_RS08885 0.78 +0.1
753,549 - MMP_RS08885 0.78 -0.1
753,549 - MMP_RS08885 0.78 -0.0
753,549 - MMP_RS08885 0.78 +0.0
753,550 + MMP_RS08885 0.78 -0.0
753,550 + MMP_RS08885 0.78 +0.8
753,553 + MMP_RS08885 0.79 -0.4
753,569 - MMP_RS08885 0.82 +0.3
753,570 + MMP_RS08885 0.82 -0.4
753,600 - MMP_RS08885 0.88 +0.1
753,608 + MMP_RS08885 0.90 +0.2
753,624 - +0.5
753,658 - -0.2
753,661 + -0.1
753,682 + -0.4
753,709 - +0.1
753,740 + +0.2
753,747 + +1.0
753,785 - +0.2
753,809 - MMP_RS03975 0.11 +0.5
753,810 + MMP_RS03975 0.12 -0.2
753,867 + MMP_RS03975 0.30 -0.2
753,869 - MMP_RS03975 0.31 +0.4
753,870 + MMP_RS03975 0.31 +0.1
753,950 + MMP_RS03975 0.57 +0.2
753,957 + MMP_RS03975 0.59 +0.0
753,967 + MMP_RS03975 0.62 -0.0
753,997 - MMP_RS03975 0.72 +0.2
753,997 - MMP_RS03975 0.72 -0.2
753,998 + MMP_RS03975 0.72 +0.5
754,000 + MMP_RS03975 0.73 +0.3
754,015 - MMP_RS03975 0.78 -0.1
754,021 - MMP_RS03975 0.80 +0.2
754,021 - MMP_RS03975 0.80 +0.3
754,022 + MMP_RS03975 0.80 -0.3
754,022 + MMP_RS03975 0.80 -0.1
754,023 - MMP_RS03975 0.81 +0.6
754,023 - MMP_RS03975 0.81 +0.2
754,023 - MMP_RS03975 0.81 +0.2
754,023 - MMP_RS03975 0.81 -0.0
754,023 - MMP_RS03975 0.81 -0.2
754,024 + MMP_RS03975 0.81 -0.1
754,025 - MMP_RS03975 0.81 +0.1
754,026 + MMP_RS03975 0.82 +0.2
754,026 + MMP_RS03975 0.82 -0.3
754,026 + MMP_RS03975 0.82 -0.4
754,070 + +0.4
754,073 + -0.0
754,177 - MMP_RS03980 0.23 -0.0
754,228 + MMP_RS03980 0.42 +0.1
754,241 + MMP_RS03980 0.47 -0.2
754,264 + MMP_RS03980 0.55 -0.3
754,266 + MMP_RS03980 0.56 +0.2
754,284 - MMP_RS03980 0.62 +0.5
754,299 - MMP_RS03980 0.68 +0.4
754,305 + MMP_RS03980 0.70 -0.2
754,305 + MMP_RS03980 0.70 -0.3
754,323 - MMP_RS03980 0.77 +0.4
754,323 - MMP_RS03980 0.77 -0.0
754,347 + MMP_RS03980 0.85 -0.0
754,408 - +0.4
754,502 - -0.3
754,541 + +0.2
754,594 - -0.6
754,597 - +0.2
754,601 - -0.1
754,635 + MMP_RS03985 0.13 +0.1

Or see this region's nucleotide sequence