Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04110 and MMP_RS04115 are separated by 615 nucleotides MMP_RS04115 and MMP_RS04120 are separated by 373 nucleotides
MMP_RS04110: MMP_RS04110 - methyl-accepting chemotaxis protein, at 778,782 to 780,980
_RS04110
MMP_RS04115: MMP_RS04115 - cytosine permease, at 781,596 to 782,831
_RS04115
MMP_RS04120: MMP_RS04120 - hypothetical protein, at 783,205 to 783,807
_RS04120
Position (kb) 781
782
783 Strain fitness (log2 ratio) -1
0
1 at 780.618 kb on + strand, within MMP_RS04110 at 780.637 kb on - strand, within MMP_RS04110 at 780.698 kb on + strand, within MMP_RS04110 at 780.731 kb on + strand, within MMP_RS04110 at 780.865 kb on - strand at 780.887 kb on + strand at 781.001 kb on - strand at 781.002 kb on + strand at 781.017 kb on - strand at 781.019 kb on - strand at 781.020 kb on + strand at 781.031 kb on - strand at 781.031 kb on - strand at 781.031 kb on - strand at 781.032 kb on + strand at 781.034 kb on - strand at 781.034 kb on - strand at 781.048 kb on - strand at 781.049 kb on + strand at 781.049 kb on + strand at 781.050 kb on - strand at 781.050 kb on - strand at 781.050 kb on - strand at 781.051 kb on + strand at 781.051 kb on + strand at 781.056 kb on - strand at 781.057 kb on + strand at 781.057 kb on + strand at 781.058 kb on - strand at 781.058 kb on - strand at 781.058 kb on - strand at 781.059 kb on + strand at 781.059 kb on + strand at 781.061 kb on + strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.088 kb on - strand at 781.089 kb on + strand at 781.089 kb on + strand at 781.097 kb on - strand at 781.097 kb on - strand at 781.098 kb on + strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.099 kb on - strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.100 kb on + strand at 781.111 kb on + strand at 781.111 kb on + strand at 781.131 kb on - strand at 781.132 kb on + strand at 781.134 kb on + strand at 781.134 kb on + strand at 781.134 kb on + strand at 781.155 kb on + strand at 781.168 kb on - strand at 781.168 kb on - strand at 781.173 kb on + strand at 781.190 kb on - strand at 781.190 kb on - strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.196 kb on - strand at 781.197 kb on + strand at 781.239 kb on + strand at 781.267 kb on - strand at 781.267 kb on - strand at 781.315 kb on - strand at 781.332 kb on + strand at 781.336 kb on + strand at 781.337 kb on - strand at 781.432 kb on + strand at 781.482 kb on - strand at 781.505 kb on - strand at 781.515 kb on - strand at 781.523 kb on + strand at 781.578 kb on + strand at 781.586 kb on + strand at 781.589 kb on + strand at 781.590 kb on - strand at 781.597 kb on - strand at 781.626 kb on - strand at 781.633 kb on - strand at 781.634 kb on + strand at 781.638 kb on + strand at 781.638 kb on + strand at 781.662 kb on - strand at 781.749 kb on + strand, within MMP_RS04115 at 781.768 kb on - strand, within MMP_RS04115 at 781.802 kb on - strand, within MMP_RS04115 at 781.802 kb on - strand, within MMP_RS04115 at 781.835 kb on - strand, within MMP_RS04115 at 781.835 kb on - strand, within MMP_RS04115 at 781.854 kb on - strand, within MMP_RS04115 at 781.855 kb on + strand, within MMP_RS04115 at 781.862 kb on - strand, within MMP_RS04115 at 781.868 kb on + strand, within MMP_RS04115 at 781.938 kb on + strand, within MMP_RS04115 at 781.998 kb on + strand, within MMP_RS04115 at 782.097 kb on - strand, within MMP_RS04115 at 782.314 kb on + strand, within MMP_RS04115 at 782.358 kb on + strand, within MMP_RS04115 at 782.361 kb on - strand, within MMP_RS04115 at 782.364 kb on - strand, within MMP_RS04115 at 782.365 kb on + strand, within MMP_RS04115 at 782.370 kb on + strand, within MMP_RS04115 at 782.390 kb on + strand, within MMP_RS04115 at 782.399 kb on - strand, within MMP_RS04115 at 782.400 kb on + strand, within MMP_RS04115 at 782.406 kb on - strand, within MMP_RS04115 at 782.427 kb on - strand, within MMP_RS04115 at 782.427 kb on - strand, within MMP_RS04115 at 782.428 kb on + strand, within MMP_RS04115 at 782.437 kb on + strand, within MMP_RS04115 at 782.536 kb on - strand, within MMP_RS04115 at 782.536 kb on - strand, within MMP_RS04115 at 782.605 kb on - strand, within MMP_RS04115 at 782.626 kb on + strand, within MMP_RS04115 at 782.637 kb on - strand, within MMP_RS04115 at 782.758 kb on + strand at 782.833 kb on + strand at 782.838 kb on + strand at 782.838 kb on + strand at 782.849 kb on + strand at 782.919 kb on - strand at 782.920 kb on + strand at 782.920 kb on + strand at 782.921 kb on - strand at 782.949 kb on + strand at 782.956 kb on + strand at 782.989 kb on + strand at 783.008 kb on + strand at 783.051 kb on - strand at 783.051 kb on - strand at 783.078 kb on + strand at 783.078 kb on + strand at 783.106 kb on + strand at 783.146 kb on - strand at 783.168 kb on + strand at 783.226 kb on + strand at 783.226 kb on + strand at 783.228 kb on + strand at 783.228 kb on + strand at 783.257 kb on - strand at 783.356 kb on - strand, within MMP_RS04120 at 783.418 kb on - strand, within MMP_RS04120 at 783.466 kb on - strand, within MMP_RS04120 at 783.512 kb on + strand, within MMP_RS04120 at 783.569 kb on + strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.679 kb on + strand, within MMP_RS04120 at 783.681 kb on - strand, within MMP_RS04120 at 783.687 kb on - strand, within MMP_RS04120 at 783.693 kb on + strand, within MMP_RS04120 at 783.717 kb on - strand, within MMP_RS04120 at 783.759 kb on - strand at 783.795 kb on - strand at 783.800 kb on - strand at 783.801 kb on + strand at 783.819 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 780,618 + MMP_RS04110 0.83 +0.2 780,637 - MMP_RS04110 0.84 -0.1 780,698 + MMP_RS04110 0.87 -0.7 780,731 + MMP_RS04110 0.89 -0.0 780,865 - +0.3 780,887 + -0.2 781,001 - -0.4 781,002 + +0.0 781,017 - -0.5 781,019 - +0.1 781,020 + -0.2 781,031 - -0.3 781,031 - -0.6 781,031 - -0.2 781,032 + -0.0 781,034 - +0.2 781,034 - +0.1 781,048 - +0.1 781,049 + -0.7 781,049 + -0.0 781,050 - -0.3 781,050 - +0.1 781,050 - +0.1 781,051 + +0.0 781,051 + +0.1 781,056 - +0.2 781,057 + +0.2 781,057 + +0.2 781,058 - +0.1 781,058 - +0.2 781,058 - -0.6 781,059 + +0.3 781,059 + +0.1 781,061 + -0.2 781,088 - +0.4 781,088 - +0.3 781,088 - -0.3 781,088 - -1.3 781,088 - +0.1 781,088 - +0.2 781,089 + +0.4 781,089 + -0.2 781,097 - -0.3 781,097 - -0.3 781,098 + +0.2 781,099 - +0.1 781,099 - -0.1 781,099 - -0.0 781,099 - -0.2 781,099 - +0.0 781,100 + +0.4 781,100 + -0.2 781,100 + -0.3 781,100 + +0.2 781,100 + -0.1 781,100 + +0.1 781,111 + -0.3 781,111 + +0.3 781,131 - +0.2 781,132 + +0.2 781,134 + +0.0 781,134 + +0.2 781,134 + -0.3 781,155 + +0.2 781,168 - +0.4 781,168 - +0.0 781,173 + -0.5 781,190 - -0.2 781,190 - +0.2 781,196 - -0.0 781,196 - +1.0 781,196 - +0.2 781,197 + -0.4 781,239 + +0.4 781,267 - +0.0 781,267 - +0.2 781,315 - +0.0 781,332 + +0.3 781,336 + +0.4 781,337 - -0.2 781,432 + -0.2 781,482 - +0.2 781,505 - -0.1 781,515 - +0.3 781,523 + +0.0 781,578 + +0.0 781,586 + +0.1 781,589 + -0.2 781,590 - +0.0 781,597 - +0.1 781,626 - -0.5 781,633 - +0.0 781,634 + +0.2 781,638 + +0.1 781,638 + -0.5 781,662 - +0.2 781,749 + MMP_RS04115 0.12 -0.0 781,768 - MMP_RS04115 0.14 -0.0 781,802 - MMP_RS04115 0.17 -0.2 781,802 - MMP_RS04115 0.17 -0.3 781,835 - MMP_RS04115 0.19 -0.0 781,835 - MMP_RS04115 0.19 +0.1 781,854 - MMP_RS04115 0.21 +0.0 781,855 + MMP_RS04115 0.21 -0.2 781,862 - MMP_RS04115 0.22 -0.0 781,868 + MMP_RS04115 0.22 +0.2 781,938 + MMP_RS04115 0.28 +0.1 781,998 + MMP_RS04115 0.33 +0.0 782,097 - MMP_RS04115 0.41 -0.1 782,314 + MMP_RS04115 0.58 -0.4 782,358 + MMP_RS04115 0.62 -0.2 782,361 - MMP_RS04115 0.62 -0.8 782,364 - MMP_RS04115 0.62 -0.2 782,365 + MMP_RS04115 0.62 +0.2 782,370 + MMP_RS04115 0.63 -0.2 782,390 + MMP_RS04115 0.64 -0.1 782,399 - MMP_RS04115 0.65 -0.1 782,400 + MMP_RS04115 0.65 -0.3 782,406 - MMP_RS04115 0.66 -0.1 782,427 - MMP_RS04115 0.67 -0.2 782,427 - MMP_RS04115 0.67 +0.1 782,428 + MMP_RS04115 0.67 +0.2 782,437 + MMP_RS04115 0.68 -0.2 782,536 - MMP_RS04115 0.76 -0.5 782,536 - MMP_RS04115 0.76 -0.2 782,605 - MMP_RS04115 0.82 +0.7 782,626 + MMP_RS04115 0.83 +0.0 782,637 - MMP_RS04115 0.84 +0.5 782,758 + -0.3 782,833 + -0.1 782,838 + -0.1 782,838 + -0.2 782,849 + +1.5 782,919 - +0.2 782,920 + -0.1 782,920 + -0.1 782,921 - +0.2 782,949 + +0.7 782,956 + +0.2 782,989 + -0.0 783,008 + +0.0 783,051 - -0.4 783,051 - -0.5 783,078 + +0.3 783,078 + +0.3 783,106 + -0.5 783,146 - -0.2 783,168 + -0.4 783,226 + +0.6 783,226 + -0.2 783,228 + -0.6 783,228 + -0.1 783,257 - -0.1 783,356 - MMP_RS04120 0.25 +0.1 783,418 - MMP_RS04120 0.35 +0.1 783,466 - MMP_RS04120 0.43 +0.2 783,512 + MMP_RS04120 0.51 -0.4 783,569 + MMP_RS04120 0.60 +0.1 783,667 - MMP_RS04120 0.77 -0.0 783,667 - MMP_RS04120 0.77 -0.5 783,668 + MMP_RS04120 0.77 +0.1 783,668 + MMP_RS04120 0.77 -0.0 783,668 + MMP_RS04120 0.77 +0.1 783,668 + MMP_RS04120 0.77 -0.1 783,671 - MMP_RS04120 0.77 -0.3 783,671 - MMP_RS04120 0.77 +0.6 783,678 - MMP_RS04120 0.78 -0.0 783,678 - MMP_RS04120 0.78 +0.5 783,679 + MMP_RS04120 0.79 -0.0 783,681 - MMP_RS04120 0.79 -0.6 783,687 - MMP_RS04120 0.80 +0.1 783,693 + MMP_RS04120 0.81 -0.2 783,717 - MMP_RS04120 0.85 -0.0 783,759 - -0.0 783,795 - +0.2 783,800 - -0.3 783,801 + -0.3 783,819 + +0.6
Or see this region's nucleotide sequence