Experiment: Formate McCas no stress control 2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS02675 and MMP_RS02680 overlap by 14 nucleotides MMP_RS02680 and MMP_RS02685 are separated by 13 nucleotides MMP_RS02685 and MMP_RS02690 are separated by 586 nucleotides
MMP_RS02675: MMP_RS02675 - hypothetical protein, at 509,394 to 510,107
_RS02675
MMP_RS02680: MMP_RS02680 - ABC transporter permease, at 510,094 to 510,894
_RS02680
MMP_RS02685: MMP_RS02685 - molybdate ABC transporter substrate-binding protein, at 510,908 to 511,690
_RS02685
MMP_RS02690: MMP_RS02690 - FmdE family protein, at 512,277 to 512,852
_RS02690
Position (kb) 510
511
512 Strain fitness (log2 ratio) -1
0
1 at 510.096 kb on + strand at 510.135 kb on - strand at 510.135 kb on - strand at 510.139 kb on - strand at 510.140 kb on + strand at 510.145 kb on - strand at 510.146 kb on + strand at 510.146 kb on + strand at 510.167 kb on + strand at 510.175 kb on - strand, within MMP_RS02680 at 510.448 kb on + strand, within MMP_RS02680 at 510.462 kb on - strand, within MMP_RS02680 at 510.527 kb on + strand, within MMP_RS02680 at 510.659 kb on - strand, within MMP_RS02680 at 510.706 kb on - strand, within MMP_RS02680 at 510.796 kb on - strand, within MMP_RS02680 at 510.821 kb on + strand at 510.941 kb on - strand at 511.021 kb on - strand, within MMP_RS02685 at 511.022 kb on + strand, within MMP_RS02685 at 511.039 kb on - strand, within MMP_RS02685 at 511.040 kb on + strand, within MMP_RS02685 at 511.045 kb on + strand, within MMP_RS02685 at 511.146 kb on + strand, within MMP_RS02685 at 511.403 kb on + strand, within MMP_RS02685 at 511.445 kb on - strand, within MMP_RS02685 at 511.446 kb on + strand, within MMP_RS02685 at 511.584 kb on - strand, within MMP_RS02685 at 511.585 kb on + strand, within MMP_RS02685 at 511.593 kb on + strand, within MMP_RS02685 at 511.596 kb on + strand, within MMP_RS02685 at 511.596 kb on + strand, within MMP_RS02685 at 511.781 kb on - strand at 511.782 kb on + strand at 511.782 kb on + strand at 511.785 kb on - strand at 511.989 kb on - strand at 512.139 kb on - strand at 512.140 kb on + strand at 512.191 kb on + strand at 512.194 kb on - strand at 512.194 kb on - strand at 512.195 kb on + strand at 512.250 kb on - strand at 512.251 kb on + strand at 512.262 kb on - strand at 512.263 kb on + strand at 512.275 kb on + strand at 512.275 kb on + strand at 512.275 kb on + strand at 512.282 kb on - strand at 512.344 kb on - strand, within MMP_RS02690 at 512.400 kb on + strand, within MMP_RS02690 at 512.611 kb on - strand, within MMP_RS02690 at 512.634 kb on - strand, within MMP_RS02690 at 512.675 kb on + strand, within MMP_RS02690 at 512.682 kb on + strand, within MMP_RS02690
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 2 remove 510,096 + +0.3 510,135 - +0.3 510,135 - -0.2 510,139 - +0.3 510,140 + -0.2 510,145 - +0.1 510,146 + +0.2 510,146 + +0.2 510,167 + +0.1 510,175 - MMP_RS02680 0.10 -0.4 510,448 + MMP_RS02680 0.44 +0.2 510,462 - MMP_RS02680 0.46 +0.3 510,527 + MMP_RS02680 0.54 -0.1 510,659 - MMP_RS02680 0.71 +0.4 510,706 - MMP_RS02680 0.76 +0.0 510,796 - MMP_RS02680 0.88 +0.2 510,821 + +0.2 510,941 - -0.1 511,021 - MMP_RS02685 0.14 +0.2 511,022 + MMP_RS02685 0.15 +0.2 511,039 - MMP_RS02685 0.17 +0.3 511,040 + MMP_RS02685 0.17 -0.4 511,045 + MMP_RS02685 0.17 -0.0 511,146 + MMP_RS02685 0.30 +0.5 511,403 + MMP_RS02685 0.63 -0.4 511,445 - MMP_RS02685 0.69 -0.2 511,446 + MMP_RS02685 0.69 +0.4 511,584 - MMP_RS02685 0.86 -0.4 511,585 + MMP_RS02685 0.86 -0.2 511,593 + MMP_RS02685 0.87 -0.1 511,596 + MMP_RS02685 0.88 -0.5 511,596 + MMP_RS02685 0.88 +0.2 511,781 - +0.2 511,782 + +1.7 511,782 + -0.1 511,785 - +0.1 511,989 - +0.1 512,139 - -0.0 512,140 + +0.3 512,191 + +0.2 512,194 - -0.7 512,194 - +0.8 512,195 + -0.2 512,250 - -0.2 512,251 + -0.1 512,262 - -0.0 512,263 + -0.5 512,275 + -0.5 512,275 + -0.5 512,275 + +0.4 512,282 - +0.0 512,344 - MMP_RS02690 0.12 -0.1 512,400 + MMP_RS02690 0.21 +0.0 512,611 - MMP_RS02690 0.58 -0.2 512,634 - MMP_RS02690 0.62 +0.2 512,675 + MMP_RS02690 0.69 +0.1 512,682 + MMP_RS02690 0.70 -0.4
Or see this region's nucleotide sequence