Experiment: Gly-Glu (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11280 and BWI76_RS11285 are separated by 84 nucleotides BWI76_RS11285 and BWI76_RS11290 are separated by 100 nucleotides BWI76_RS11290 and BWI76_RS11295 are separated by 87 nucleotides BWI76_RS11295 and BWI76_RS11300 are separated by 82 nucleotides
BWI76_RS11280: BWI76_RS11280 - two-component system response regulator PhoP, at 2,379,284 to 2,379,958
_RS11280
BWI76_RS11285: BWI76_RS11285 - transcriptional regulator, at 2,380,043 to 2,380,489
_RS11285
BWI76_RS11290: BWI76_RS11290 - MFS transporter, at 2,380,590 to 2,381,819
_RS11290
BWI76_RS11295: BWI76_RS11295 - AraC family transcriptional regulator, at 2,381,907 to 2,382,713
_RS11295
BWI76_RS11300: BWI76_RS11300 - cupin, at 2,382,796 to 2,383,158
_RS11300
Position (kb)
2380
2381
2382 Strain fitness (log2 ratio)
-1
0
1 at 2379.930 kb on + strand at 2380.386 kb on - strand, within BWI76_RS11285 at 2380.818 kb on + strand, within BWI76_RS11290 at 2380.884 kb on - strand, within BWI76_RS11290 at 2381.047 kb on - strand, within BWI76_RS11290 at 2381.123 kb on - strand, within BWI76_RS11290 at 2381.207 kb on - strand, within BWI76_RS11290 at 2381.207 kb on - strand, within BWI76_RS11290 at 2382.184 kb on - strand, within BWI76_RS11295 at 2382.749 kb on - strand at 2382.780 kb on - strand at 2382.815 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Gly-Glu (C) remove 2,379,930 + +1.2 2,380,386 - BWI76_RS11285 0.77 +0.1 2,380,818 + BWI76_RS11290 0.19 -0.3 2,380,884 - BWI76_RS11290 0.24 +0.1 2,381,047 - BWI76_RS11290 0.37 -0.6 2,381,123 - BWI76_RS11290 0.43 -1.1 2,381,207 - BWI76_RS11290 0.50 +0.3 2,381,207 - BWI76_RS11290 0.50 -0.6 2,382,184 - BWI76_RS11295 0.34 -0.8 2,382,749 - -0.8 2,382,780 - -0.5 2,382,815 - -1.5
Or see this region's nucleotide sequence