Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1536

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
1,724,824	+				+0.4
1,724,824	+				-1.9
1,724,868	-				-1.7
1,724,868	-				+0.7
1,724,868	-				+0.9
1,724,868	-				+1.6
1,724,873	+				-0.2
1,724,873	+				-0.4
1,724,874	-				-1.3
1,724,882	+				-1.7
1,724,915	+				-1.4
1,724,930	+				+0.1
1,724,997	+				-0.8
1,725,095	+				-0.9
1,725,095	+				-1.4
1,725,175	+				-2.4
1,725,175	+				+0.1
1,725,273	+				-0.1
1,725,273	+				-0.2
1,725,275	+				+0.5
1,725,275	+				+1.4
1,725,275	+				-1.7
1,725,275	+				+1.1
1,725,276	-				+1.1
1,725,276	-				+2.0
1,725,317	+				-0.0
1,725,318	-				-0.3
1,725,332	-				-1.0
1,725,381	+				+4.3
1,725,382	-				-0.4
1,725,382	-				-0.3
1,725,384	+				-0.0
1,725,385	-				-0.5
1,725,390	+				-0.7
1,725,390	+				-1.2
1,725,390	+				-0.7
1,725,485	+				-1.2
1,725,485	+				-1.4
1,725,486	-				-0.7
1,725,486	-				-1.9
1,725,486	-				-0.4
1,725,486	-				+2.4
1,725,487	+				+1.6
1,725,488	-				-0.1
1,725,488	-				+1.1
1,725,488	-				+1.8
1,725,488	-				-1.2
1,725,490	-				-1.3
1,725,490	-				+1.3
1,725,508	-				-0.9
1,725,509	+				+0.1
1,725,515	+				-2.2
1,725,515	+				-1.6
1,725,516	-				+0.7
1,725,516	-				-0.9
1,725,516	-				-1.9
1,725,516	-				+1.1
1,725,597	+				-0.7
1,725,598	-				-2.9
1,725,631	+				+0.6
1,725,638	+				-1.2
1,725,641	+				-0.9
1,725,642	-				-1.4
1,725,642	-				+0.0
1,725,730	-				-0.3
1,725,801	-				-0.4
1,725,801	-				+1.6
1,725,819	-				+1.1
1,725,832	-				+2.1
1,725,872	-				+0.7
1,725,879	+				+0.4
1,725,879	+				-0.4
1,725,879	+				-1.2
1,725,879	+				-2.3
1,725,880	-				-0.1
1,725,880	-				+2.7
1,725,880	-				+0.7
1,725,955	+		Psyr_1536	0.10	+0.7
1,725,956	-		Psyr_1536	0.10	-0.9
1,725,956	-		Psyr_1536	0.10	-1.7
1,725,956	-		Psyr_1536	0.10	-0.6
1,725,958	+		Psyr_1536	0.10	+0.3
1,725,959	-		Psyr_1536	0.10	+2.1
1,725,985	+		Psyr_1536	0.12	+1.7
1,725,985	+		Psyr_1536	0.12	-0.3
1,725,985	+		Psyr_1536	0.12	-0.2
1,725,985	+		Psyr_1536	0.12	+0.6
1,725,986	-		Psyr_1536	0.12	-1.9
1,725,986	-		Psyr_1536	0.12	-1.4
1,725,986	-		Psyr_1536	0.12	+1.6
1,725,986	-		Psyr_1536	0.12	+2.5
1,725,987	+		Psyr_1536	0.12	-0.3
1,725,987	+		Psyr_1536	0.12	+1.1
1,725,987	+		Psyr_1536	0.12	+1.2
1,725,987	+		Psyr_1536	0.12	-0.3
1,725,988	-		Psyr_1536	0.12	+1.1
1,726,053	+		Psyr_1536	0.16	-1.3
1,726,053	+		Psyr_1536	0.16	-0.6
1,726,053	+		Psyr_1536	0.16	-0.3
1,726,053	+		Psyr_1536	0.16	-0.3
1,726,054	-		Psyr_1536	0.16	+0.8
1,726,110	+		Psyr_1536	0.19	-1.4
1,726,197	+		Psyr_1536	0.25	-1.0
1,726,246	-		Psyr_1536	0.27	+0.3
1,726,300	+		Psyr_1536	0.31	+2.2
1,726,301	-		Psyr_1536	0.31	-0.2
1,726,384	+		Psyr_1536	0.36	-0.7
1,726,404	+		Psyr_1536	0.37	-0.5
1,726,404	+		Psyr_1536	0.37	-0.9
1,726,405	-		Psyr_1536	0.37	-0.3
1,726,405	-		Psyr_1536	0.37	+1.5
1,726,549	+		Psyr_1536	0.46	-1.2
1,726,676	+		Psyr_1536	0.53	+1.7
1,726,676	+		Psyr_1536	0.53	-0.9
1,726,677	-		Psyr_1536	0.53	+1.3
1,726,747	+		Psyr_1536	0.57	-0.4
1,726,748	-		Psyr_1536	0.57	-0.5
1,726,769	+		Psyr_1536	0.59	+1.4
1,726,770	-		Psyr_1536	0.59	-1.0
1,726,776	-		Psyr_1536	0.59	-1.6
1,727,022	+		Psyr_1536	0.74	+0.9
1,727,023	-		Psyr_1536	0.74	-0.9
1,727,023	-		Psyr_1536	0.74	+0.3
1,727,023	-		Psyr_1536	0.74	+1.9
1,727,023	-		Psyr_1536	0.74	+2.0
1,727,087	-		Psyr_1536	0.78	+0.1
1,727,130	+		Psyr_1536	0.80	+0.8
1,727,131	-		Psyr_1536	0.80	+2.0
1,727,154	+		Psyr_1536	0.82	-0.9
1,727,154	+		Psyr_1536	0.82	-0.3
1,727,155	-		Psyr_1536	0.82	+2.6
1,727,163	+		Psyr_1536	0.82	-1.0
1,727,164	-		Psyr_1536	0.82	-1.2
1,727,167	+		Psyr_1536	0.82	+0.1
1,727,167	+		Psyr_1536	0.82	+0.6
1,727,167	+		Psyr_1536	0.82	+1.3
1,727,167	+		Psyr_1536	0.82	+1.6
1,727,167	+		Psyr_1536	0.82	+0.1
1,727,167	+		Psyr_1536	0.82	+1.7
1,727,167	+		Psyr_1536	0.82	+0.6
1,727,167	+		Psyr_1536	0.82	-0.9
1,727,167	+		Psyr_1536	0.82	+1.0
1,727,167	+		Psyr_1536	0.82	-0.4
1,727,167	+		Psyr_1536	0.82	+1.1
1,727,167	+		Psyr_1536	0.82	-0.0
1,727,167	+		Psyr_1536	0.82	-1.2
1,727,167	+		Psyr_1536	0.82	-0.4
1,727,167	+		Psyr_1536	0.82	+1.0
1,727,167	+		Psyr_1536	0.82	+1.1
1,727,167	+		Psyr_1536	0.82	-0.2
1,727,167	+		Psyr_1536	0.82	+1.7
1,727,167	+		Psyr_1536	0.82	+0.3
1,727,167	+		Psyr_1536	0.82	+0.5
1,727,167	+		Psyr_1536	0.82	-1.6
1,727,167	+		Psyr_1536	0.82	+0.6
1,727,168	-		Psyr_1536	0.83	-1.7
1,727,168	-		Psyr_1536	0.83	-0.6
1,727,168	-		Psyr_1536	0.83	+0.7
1,727,168	-		Psyr_1536	0.83	+0.2
1,727,168	-		Psyr_1536	0.83	+0.7
1,727,168	-		Psyr_1536	0.83	+1.3
1,727,168	-		Psyr_1536	0.83	-0.8
1,727,168	-		Psyr_1536	0.83	+0.8
1,727,168	-		Psyr_1536	0.83	-0.3
1,727,168	-		Psyr_1536	0.83	-0.2
1,727,168	-		Psyr_1536	0.83	+0.7
1,727,224	-		Psyr_1536	0.86	+0.6
1,727,304	+				+0.7
1,727,305	-				-0.7
1,727,435	+				-0.4
1,727,435	+				+3.1
1,727,435	+				+0.1
1,727,435	+				-1.9
1,727,435	+				+1.1
1,727,436	-				-2.6
1,727,436	-				+0.2
1,727,448	+				+1.8
1,727,457	+				-0.1
1,727,457	+				+0.1
1,727,458	-				-1.2
1,727,458	-				+1.1
1,727,479	+				-1.4
1,727,479	+				+0.0
1,727,480	-				-0.2
1,727,480	-				+1.0
1,727,481	+				+0.9
1,727,482	-				+1.7
1,727,482	-				-1.4
1,727,482	-				-0.2
1,727,482	-				-0.4
1,727,482	-				+0.8
1,727,482	-				+0.4
1,727,482	-				+0.9
1,727,495	+				-1.1
1,727,495	+				-0.3
1,727,675	+		Psyr_1537	0.13	-0.1
1,727,675	+		Psyr_1537	0.13	-0.3
1,727,676	-		Psyr_1537	0.13	-1.4
1,727,676	-		Psyr_1537	0.13	+1.5
1,727,676	-		Psyr_1537	0.13	+0.5
1,727,711	+		Psyr_1537	0.16	+0.7
1,727,711	+		Psyr_1537	0.16	-1.0
1,727,712	-		Psyr_1537	0.16	-0.2
1,727,712	-		Psyr_1537	0.16	-0.6
1,727,712	-		Psyr_1537	0.16	-1.9
1,727,712	-		Psyr_1537	0.16	+0.7
1,727,714	+		Psyr_1537	0.16	+0.1
1,727,714	+		Psyr_1537	0.16	-0.9
1,727,714	+		Psyr_1537	0.16	-0.2
1,727,714	+		Psyr_1537	0.16	-0.7
1,727,714	+		Psyr_1537	0.16	+0.7
1,727,714	+		Psyr_1537	0.16	-2.2
1,727,714	+		Psyr_1537	0.16	+1.5
1,727,714	+		Psyr_1537	0.16	+0.0
1,727,714	+		Psyr_1537	0.16	-1.7
1,727,714	+		Psyr_1537	0.16	-0.2
1,727,714	+		Psyr_1537	0.16	+0.8
1,727,715	-		Psyr_1537	0.16	-0.9
1,727,715	-		Psyr_1537	0.16	+0.3
1,727,715	-		Psyr_1537	0.16	+1.8
1,727,715	-		Psyr_1537	0.16	-1.5
1,727,715	-		Psyr_1537	0.16	+0.9
1,727,715	-		Psyr_1537	0.16	-1.9
1,727,770	+		Psyr_1537	0.20	+0.3
1,727,770	+		Psyr_1537	0.20	+0.8
1,727,770	+				-0.2
1,727,770	+		Psyr_1537	0.20	+1.1
1,727,771	-		Psyr_1537	0.21	-0.4
1,727,840	+		Psyr_1537	0.26	+0.2
1,727,841	-		Psyr_1537	0.26	-1.2
1,727,841	-		Psyr_1537	0.26	-1.2
1,727,841	-		Psyr_1537	0.26	+0.6
1,727,841	-		Psyr_1537	0.26	-1.7
1,727,841	-		Psyr_1537	0.26	+1.7
1,727,852	+		Psyr_1537	0.27	+0.7
1,727,852	+		Psyr_1537	0.27	+0.7
1,728,007	+		Psyr_1537	0.38	-0.5
1,728,014	-		Psyr_1537	0.39	+0.1
1,728,035	+		Psyr_1537	0.40	-0.3
1,728,095	+		Psyr_1537	0.45	-0.6
1,728,095	+		Psyr_1537	0.45	+0.1
1,728,096	-		Psyr_1537	0.45	-0.1
1,728,150	+		Psyr_1537	0.49	+0.4
1,728,151	-		Psyr_1537	0.49	-2.4
1,728,151	-		Psyr_1537	0.49	+0.5
1,728,373	-				+0.1
1,728,437	+		Psyr_1537	0.70	+0.3
1,728,437	+		Psyr_1537	0.70	-3.4