Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1256

Experiment: apoplastic; Lima bean

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Lima bean
1,410,897	+		Psyr_1254	0.56	+0.8
1,410,898	-		Psyr_1254	0.57	-2.9
1,410,898	-		Psyr_1254	0.57	-1.8
1,410,954	+		Psyr_1254	0.64	+1.7
1,410,954	+		Psyr_1254	0.64	-0.4
1,410,955	-		Psyr_1254	0.64	-1.6
1,411,032	+		Psyr_1254	0.73	-0.6
1,411,032	+		Psyr_1254	0.73	-1.4
1,411,032	+		Psyr_1254	0.73	-2.5
1,411,032	+		Psyr_1254	0.73	-0.3
1,411,032	+		Psyr_1254	0.73	+1.2
1,411,032	+		Psyr_1254	0.73	-0.2
1,411,032	+		Psyr_1254	0.73	+1.2
1,411,032	+		Psyr_1254	0.73	-1.3
1,411,032	+		Psyr_1254	0.73	-1.2
1,411,033	-		Psyr_1254	0.74	-0.8
1,411,033	-		Psyr_1254	0.74	+0.7
1,411,033	-		Psyr_1254	0.74	+1.0
1,411,033	-		Psyr_1254	0.74	+0.3
1,411,033	-		Psyr_1254	0.74	-0.1
1,411,033	-		Psyr_1254	0.74	+2.2
1,411,033	-		Psyr_1254	0.74	-2.2
1,411,033	-		Psyr_1254	0.74	-1.6
1,411,033	-		Psyr_1254	0.74	-0.7
1,411,033	-		Psyr_1254	0.74	-1.6
1,411,033	-		Psyr_1254	0.74	+0.3
1,411,033	-		Psyr_1254	0.74	+1.3
1,411,033	-		Psyr_1254	0.74	+1.3
1,411,033	-		Psyr_1254	0.74	-0.2
1,411,080	+		Psyr_1254	0.80	-1.1
1,411,080	+		Psyr_1254	0.80	-0.6
1,411,081	-		Psyr_1254	0.80	+0.6
1,411,229	+				+0.6
1,411,229	+				+1.3
1,411,229	+				-2.5
1,411,230	-				+0.4
1,411,230	-				+1.6
1,411,230	-				-0.2
1,411,233	-				+0.6
1,411,233	-				+0.2
1,411,233	-				+2.2
1,411,239	+				-1.4
1,411,273	-				-0.1
1,411,306	+				+0.3
1,411,306	+				+2.7
1,411,307	-				-0.4
1,411,315	+				-1.2
1,411,315	+				-0.8
1,411,315	+				+0.6
1,411,315	+				+0.4
1,411,315	+				-2.2
1,411,315	+				-0.5
1,411,315	+				-0.5
1,411,315	+				+0.6
1,411,316	-				+0.3
1,411,316	-				-1.5
1,411,316	-				+0.4
1,411,316	-				+0.6
1,411,316	-				-2.8
1,411,316	-				+0.9
1,411,316	-				+0.3
1,411,316	-				-0.8
1,411,316	-				+2.0
1,411,316	-				-1.7
1,411,316	-				+1.6
1,411,316	-				+0.5
1,411,316	-				-0.4
1,411,316	-				-1.7
1,411,316	-				-1.3
1,411,316	-				-2.4
1,411,335	-				-1.8
1,411,335	-				-0.2
1,411,335	-				+1.2
1,411,361	-				+0.6
1,411,536	+		Psyr_1255	0.42	+0.6
1,411,536	+		Psyr_1255	0.42	-0.8
1,411,536	+		Psyr_1255	0.42	-1.2
1,411,536	+		Psyr_1255	0.42	+1.1
1,411,537	-		Psyr_1255	0.42	-0.1
1,411,537	-		Psyr_1255	0.42	+0.2
1,411,537	-		Psyr_1255	0.42	-1.2
1,411,895	+				-2.2
1,411,895	+				-0.0
1,411,895	+				+0.6
1,411,895	+				-1.8
1,411,895	+				-1.1
1,411,895	+				+2.5
1,411,895	+				-2.0
1,411,895	+				+0.0
1,411,895	+				-0.4
1,411,895	+				+1.0
1,411,896	-				-0.0
1,411,896	-				-0.3
1,411,896	-				-1.2
1,411,896	-				-0.6
1,411,899	+				-0.6
1,411,899	+				+0.3
1,411,899	+				-1.6
1,411,899	+				+0.2
1,411,900	-				+0.4
1,411,900	-				-1.7
1,411,900	-				-1.5
1,411,915	+				-0.4
1,411,915	+				-0.4
1,411,915	+				+0.4
1,411,916	-				-1.2
1,411,916	-				-0.8
1,411,917	+				-1.2
1,411,917	+				-0.2
1,411,917	+				+2.1
1,411,917	+				+0.6
1,411,917	+				+3.9
1,411,917	+				+1.8
1,411,918	-				-1.8
1,411,918	-				-1.8
1,411,918	-				+1.2
1,411,918	-				+1.4
1,411,918	-				+1.5
1,411,918	-				-0.8
1,411,918	-				-2.2
1,411,918	-				+0.7
1,411,918	-				+0.8
1,411,918	-				+1.3
1,411,992	+		Psyr_1256	0.15	-0.1
1,411,992	+		Psyr_1256	0.15	+2.0
1,411,992	+		Psyr_1256	0.15	+1.4
1,411,992	+		Psyr_1256	0.15	-0.3
1,411,992	+		Psyr_1256	0.15	-1.4
1,411,993	-		Psyr_1256	0.15	-1.4
1,411,993	-		Psyr_1256	0.15	-0.8
1,411,993	-		Psyr_1256	0.15	-0.6
1,411,993	-		Psyr_1256	0.15	-0.7
1,412,016	+		Psyr_1256	0.18	+0.6
1,412,016	+		Psyr_1256	0.18	+1.7
1,412,017	-		Psyr_1256	0.18	+4.2
1,412,033	+		Psyr_1256	0.20	+0.2
1,412,033	+		Psyr_1256	0.20	-1.4
1,412,033	+		Psyr_1256	0.20	-0.8
1,412,034	-		Psyr_1256	0.20	+1.3
1,412,034	-		Psyr_1256	0.20	-3.2
1,412,034	-		Psyr_1256	0.20	+0.5
1,412,034	-		Psyr_1256	0.20	-0.7
1,412,034	-		Psyr_1256	0.20	+1.0
1,412,034	-		Psyr_1256	0.20	-1.6
1,412,034	-		Psyr_1256	0.20	-0.7
1,412,034	-		Psyr_1256	0.20	+0.6
1,412,034	-		Psyr_1256	0.20	-1.9
1,412,034	-		Psyr_1256	0.20	-1.2
1,412,094	+		Psyr_1256	0.27	-0.8
1,412,095	-		Psyr_1256	0.27	+0.2
1,412,174	-		Psyr_1256	0.36	-0.3
1,412,199	+		Psyr_1256	0.39	-0.4
1,412,200	-		Psyr_1256	0.39	-1.0
1,412,374	+		Psyr_1256	0.59	+0.1
1,412,399	-		Psyr_1256	0.62	-2.3
1,412,597	+		Psyr_1256	0.85	+2.2
1,412,597	+		Psyr_1256	0.85	-1.8
1,412,597	+		Psyr_1256	0.85	-0.5
1,412,598	-		Psyr_1256	0.85	-1.0
1,412,598	-		Psyr_1256	0.85	-0.6
1,412,777	+				+1.0
1,412,778	-				+0.1
1,412,835	+				-0.2
1,412,835	+				+2.0
1,412,875	-				-0.4
1,412,875	-				+2.2
1,412,875	-				+0.2
1,412,875	-				-0.8
1,412,899	+				-3.8
1,412,899	+				+2.7
1,412,899	+				-0.2
1,412,899	+				-0.2
1,412,899	+				-0.8
1,412,900	-				+0.5
1,412,934	-				+0.4
1,412,934	-				+0.6
1,412,947	+				-0.3
1,412,947	+				-0.6
1,412,957	+				+0.1
1,412,957	+				+0.3
1,412,957	+				-0.6
1,412,957	+				-0.8
1,412,957	+				-0.2
1,412,957	+				-0.8
1,412,957	+				-0.1
1,412,958	-				-1.2
1,412,958	-				-0.3
1,412,958	-				+0.2
1,412,958	-				+0.2
1,412,958	-				-0.2
1,412,971	+				-1.4
1,413,222	+				-0.8
1,413,222	+				-2.7
1,413,222	+				-1.5
1,413,222	+				-2.3
1,413,222	+				-1.8
1,413,223	-				-2.8
1,413,223	-				-3.2
1,413,223	-				-3.4
1,413,223	-				-2.4
1,413,223	-				-2.5
1,413,223	-				-1.7
1,413,223	-				+0.2
1,413,223	-				-2.4
1,413,270	+		Psyr_1257	0.11	-2.8
1,413,270	+		Psyr_1257	0.11	-0.4
1,413,270	+		Psyr_1257	0.11	-1.4
1,413,270	+		Psyr_1257	0.11	-1.1
1,413,271	-		Psyr_1257	0.11	-0.1
1,413,271	-		Psyr_1257	0.11	-0.9
1,413,381	-		Psyr_1257	0.18	+0.8
1,413,412	+		Psyr_1257	0.20	-0.5
1,413,412	+		Psyr_1257	0.20	+1.9
1,413,412	+		Psyr_1257	0.20	-2.4
1,413,412	+		Psyr_1257	0.20	-0.8
1,413,412	+		Psyr_1257	0.20	-2.0
1,413,412	+		Psyr_1257	0.20	+0.6
1,413,413	-		Psyr_1257	0.20	-0.1
1,413,413	-		Psyr_1257	0.20	-1.2
1,413,413	-		Psyr_1257	0.20	-1.1
1,413,413	-		Psyr_1257	0.20	+0.7
1,413,413	-		Psyr_1257	0.20	-0.6
1,413,429	+		Psyr_1257	0.21	-0.8
1,413,451	-		Psyr_1257	0.22	-1.7
1,413,451	-		Psyr_1257	0.22	-0.3
1,413,451	-		Psyr_1257	0.22	-1.7
1,413,571	-		Psyr_1257	0.29	-2.5
1,413,588	+		Psyr_1257	0.30	-2.8
1,413,588	+		Psyr_1257	0.30	-1.7
1,413,639	+		Psyr_1257	0.33	-1.2
1,413,639	+		Psyr_1257	0.33	-3.7
1,413,640	-		Psyr_1257	0.33	-1.8
1,413,675	+		Psyr_1257	0.35	+1.0
1,413,676	-		Psyr_1257	0.35	-2.0