Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02275

Experiment: 1-ethyl-3-methylimidazolium acetate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02270 and AO356_02275 are separated by 10 nucleotidesAO356_02275 and AO356_02280 are separated by 11 nucleotides AO356_02270: AO356_02270 - transcription-repair coupling factor, at 487,838 to 491,287 _02270 AO356_02275: AO356_02275 - hypothetical protein, at 491,298 to 491,864 _02275 AO356_02280: AO356_02280 - helicase, at 491,876 to 494,569 _02280 Position (kb) 491 492Strain fitness (log2 ratio) -2 -1 0 1at 490.416 kb on - strand, within AO356_02270at 490.574 kb on + strand, within AO356_02270at 490.574 kb on + strand, within AO356_02270at 490.574 kb on + strand, within AO356_02270at 490.574 kb on + strand, within AO356_02270at 490.575 kb on - strand, within AO356_02270at 490.575 kb on - strand, within AO356_02270at 490.575 kb on - strand, within AO356_02270at 490.575 kb on - strand, within AO356_02270at 490.575 kb on - strand, within AO356_02270at 490.580 kb on + strand, within AO356_02270at 490.581 kb on - strand, within AO356_02270at 490.648 kb on + strand, within AO356_02270at 490.766 kb on + strand, within AO356_02270at 490.766 kb on + strand, within AO356_02270at 490.767 kb on - strand, within AO356_02270at 490.767 kb on - strand, within AO356_02270at 490.767 kb on - strand, within AO356_02270at 490.889 kb on + strand, within AO356_02270at 490.922 kb on + strand, within AO356_02270at 490.923 kb on - strand, within AO356_02270at 491.174 kb on + strandat 491.174 kb on + strandat 491.175 kb on - strandat 491.247 kb on + strandat 491.247 kb on + strandat 491.248 kb on - strandat 491.367 kb on + strand, within AO356_02275at 491.368 kb on - strand, within AO356_02275at 491.368 kb on - strand, within AO356_02275at 491.368 kb on - strand, within AO356_02275at 491.529 kb on + strand, within AO356_02275at 491.530 kb on - strand, within AO356_02275at 491.750 kb on + strand, within AO356_02275at 491.876 kb on - strandat 492.042 kb on - strandat 492.276 kb on + strand, within AO356_02280at 492.276 kb on + strand, within AO356_02280at 492.276 kb on + strand, within AO356_02280at 492.276 kb on + strand, within AO356_02280at 492.276 kb on + strand, within AO356_02280at 492.276 kb on + strand, within AO356_02280at 492.276 kb on + strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.277 kb on - strand, within AO356_02280at 492.353 kb on + strand, within AO356_02280at 492.353 kb on + strand, within AO356_02280at 492.353 kb on + strand, within AO356_02280at 492.354 kb on - strand, within AO356_02280at 492.354 kb on - strand, within AO356_02280at 492.354 kb on - strand, within AO356_02280at 492.354 kb on - strand, within AO356_02280at 492.386 kb on + strand, within AO356_02280at 492.386 kb on + strand, within AO356_02280at 492.386 kb on + strand, within AO356_02280at 492.386 kb on + strand, within AO356_02280at 492.399 kb on - strand, within AO356_02280at 492.399 kb on - strand, within AO356_02280at 492.399 kb on - strand, within AO356_02280at 492.569 kb on + strand, within AO356_02280at 492.569 kb on + strand, within AO356_02280at 492.569 kb on + strand, within AO356_02280at 492.698 kb on + strand, within AO356_02280at 492.698 kb on + strand, within AO356_02280at 492.699 kb on - strand, within AO356_02280

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Per-strain Table

Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 20 mM
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490,416 - AO356_02270 0.75 -0.0
490,574 + AO356_02270 0.79 +0.5
490,574 + AO356_02270 0.79 -0.2
490,574 + AO356_02270 0.79 -1.1
490,574 + AO356_02270 0.79 -2.0
490,575 - AO356_02270 0.79 +0.1
490,575 - AO356_02270 0.79 +0.4
490,575 - AO356_02270 0.79 +0.1
490,575 - AO356_02270 0.79 -1.0
490,575 - AO356_02270 0.79 -0.9
490,580 + AO356_02270 0.79 -0.6
490,581 - AO356_02270 0.80 -1.2
490,648 + AO356_02270 0.81 -0.7
490,766 + AO356_02270 0.85 -1.2
490,766 + AO356_02270 0.85 -0.4
490,767 - AO356_02270 0.85 +1.0
490,767 - AO356_02270 0.85 -0.5
490,767 - AO356_02270 0.85 -0.2
490,889 + AO356_02270 0.88 -1.5
490,922 + AO356_02270 0.89 -0.5
490,923 - AO356_02270 0.89 -0.1
491,174 + -0.3
491,174 + +1.0
491,175 - -1.2
491,247 + -0.5
491,247 + -0.4
491,248 - -0.4
491,367 + AO356_02275 0.12 +1.0
491,368 - AO356_02275 0.12 +0.0
491,368 - AO356_02275 0.12 +0.9
491,368 - AO356_02275 0.12 +0.4
491,529 + AO356_02275 0.41 +0.9
491,530 - AO356_02275 0.41 -0.3
491,750 + AO356_02275 0.80 +0.9
491,876 - -0.4
492,042 - +1.3
492,276 + AO356_02280 0.15 +0.7
492,276 + AO356_02280 0.15 +1.0
492,276 + AO356_02280 0.15 -0.1
492,276 + AO356_02280 0.15 -1.9
492,276 + AO356_02280 0.15 -0.7
492,276 + AO356_02280 0.15 -0.2
492,276 + AO356_02280 0.15 -0.7
492,277 - AO356_02280 0.15 +1.1
492,277 - AO356_02280 0.15 +1.7
492,277 - AO356_02280 0.15 +0.5
492,277 - AO356_02280 0.15 +0.5
492,277 - AO356_02280 0.15 +0.9
492,277 - AO356_02280 0.15 -0.6
492,277 - AO356_02280 0.15 -0.1
492,277 - AO356_02280 0.15 -0.5
492,277 - AO356_02280 0.15 +0.4
492,277 - AO356_02280 0.15 -0.7
492,277 - AO356_02280 0.15 +0.5
492,277 - AO356_02280 0.15 -1.4
492,353 + AO356_02280 0.18 +1.1
492,353 + AO356_02280 0.18 +1.2
492,353 + AO356_02280 0.18 +0.7
492,354 - AO356_02280 0.18 +0.3
492,354 - AO356_02280 0.18 +1.0
492,354 - AO356_02280 0.18 -1.0
492,354 - AO356_02280 0.18 -1.7
492,386 + AO356_02280 0.19 +1.0
492,386 + AO356_02280 0.19 +0.2
492,386 + AO356_02280 0.19 -0.1
492,386 + AO356_02280 0.19 +0.1
492,399 - AO356_02280 0.19 +0.5
492,399 - AO356_02280 0.19 +1.0
492,399 - AO356_02280 0.19 +0.4
492,569 + AO356_02280 0.26 -0.3
492,569 + AO356_02280 0.26 -0.7
492,569 + AO356_02280 0.26 -0.4
492,698 + AO356_02280 0.31 -0.3
492,698 + AO356_02280 0.31 -0.8
492,699 - AO356_02280 0.31 +0.4

Or see this region's nucleotide sequence